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AT4G35700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.904
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : zinc finger (C2H2 type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C2H2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G35610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:AL031135EMBL:AL161587
EMBL:BT029346EMBL:CP002687EMBL:DQ446897EnsemblPlants:AT4G35700
EnsemblPlants:AT4G35700.1entrez:829722GeneID:829722GO:GO:0003700
GO:GO:0006355GO:GO:0046872GO:GO:0048235Gramene:AT4G35700.1
hmmpanther:PTHR26374hmmpanther:PTHR26374:SF186IntAct:O81801InterPro:IPR007087
KEGG:ath:AT4G35700OMA:ESDYLWSPhylomeDB:O81801PIR:T04675
PROSITE:PS00028Proteomes:UP000006548RefSeq:NP_195295.1scanprosite:PS00028
STRING:3702.AT4G35700.1SUPFAM:SSF57667TAIR:AT4G35700UniGene:At.31394
UniProt:O81801
Coordinates (TAIR10) chr4:+:16923351..16924178
Molecular Weight (calculated) 28689.30 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.41
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNPEKSKIA EEENENFDES DYLWSDEEGD IREIVLGLPA LRLSESLNVD ESIRNEAVSA AKLIVAAAKE ATGNTEQSAS GTGDVSGTPE IIKVGKPRVL
101: LEALAEASGC TPIGVTTTEG EVVKKPRKKG STQLTHLPQG PPMCNVCGKG FASWKAVFGH LRQHKDRGYL GFLPPPTFNA AEEGFGGVAT ASTGGAVATA
201: ISVGEVPTAS SAGGLATASS DGEGLVSSIG RARIDLNADP VEEEDKVIGV GSKRKFDLNR SPPPDGDEEN DDKVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)