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AT4G35580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.649
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC transcription factor-like 9
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC transcription factor-like 9 (NTL9); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC 014 (TAIR:AT1G33060.1); Has 3027 Blast hits to 3020 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3027; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGNUeggNOG:ENOG410ZJITEMBL:AL031135EMBL:AL161587EMBL:AY056443EMBL:AY081716EMBL:CP002687
EnsemblPlants:AT4G35580EnsemblPlants:AT4G35580.1EnsemblPlants:AT4G35580.2entrez:829710ExpressionAtlas:F4JN35GeneID:829710Genevisible:F4JN35
GO:GO:0003677GO:GO:0005516GO:GO:0005634GO:GO:0005789GO:GO:0005886GO:GO:0006351GO:GO:0016021
GO:GO:0045892GO:GO:0071470GO:GO:1900426Gramene:AT4G35580.2hmmpanther:PTHR31989hmmpanther:PTHR31989:SF21IntAct:F4JN35
InterPro:IPR003441iPTMnet:F4JN35KEGG:ath:AT4G35580PaxDb:F4JN35Pfam:F4JN35Pfam:PF02365Pfscan:PS51005
PIR:T04663PRIDE:F4JN35PRO:PR:F4JN35PROSITE:PS51005ProteinModelPortal:F4JN35Proteomes:UP000006548RefSeq:NP_001119122.1
RefSeq:NP_567986.3SMR:F4JN35STRING:3702.AT4G35580.2SUPFAM:SSF101941TAIR:AT4G35580tair10-symbols:NTL9TMHMM:TMhelix
UniGene:At.20744UniProt:F4JN35
Coordinates (TAIR10) chr4:-:16888581..16890744
Molecular Weight (calculated) 57252.80 Da
IEP (calculated) 5.13
GRAVY (calculated) -0.69
Length 512 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAVSMESLP LGFRFRPTDE ELVNHYLRLK INGRHSDVRV IPDIDVCKWE PWDLPALSVI KTDDPEWFFF CPRDRKYPNG HRSNRATDSG YWKATGKDRS
101: IKSKKTLIGM KKTLVFYRGR APKGERTNWI MHEYRPTLKD LDGTSPGQSP YVLCRLFHKP DDRVNGVKSD EAAFTASNKY SPDDTSSDLV QETPSSDAAV
201: EKPSDYSGGC GYAHSNSTAD GTMIEAPEEN LWLSCDLEDQ KAPLPCMDSI YAGDFSYDEI GFQFQDGTSE PDVSLTELLE EVFNNPDDFS CEESISRENP
301: AVSPNGIFSS AKMLQSAAPE DAFFNDFMAF TDTDAEMAQL QYGSEGGASG WPSDTNSYYS DLVQQEQMIN HNTENNLTEG RGIKIRARQP QNRQSTGLIN
401: QGIAPRRIRL QLQSNSEVKE REEVNEGHTV IPEAKEAAAK YSEKSGSLVK PQIKLRARGT IGQVKGERFA DDEVQVQSRK RRGGKRWKVV ATVMVAVMVG
501: VGMGIWRTLV SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)