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AT4G35570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : high mobility group B5
Curator
Summary (TAIR10)
Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Cannot be phosphorylated by CK2alpha.
Computational
Description (TAIR10)
high mobility group B5 (HMGB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B4 (TAIR:AT2G17560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:14991eggNOG:COG5648eggNOG:KOG0381EMBL:AK317173EMBL:AL031135EMBL:AL161587EMBL:AY085615
EMBL:BT025597EMBL:CP002687EMBL:Y14075EnsemblPlants:AT4G35570EnsemblPlants:AT4G35570.1entrez:829709Gene3D:1.10.30.10
GeneID:829709Genevisible:O49597GO:GO:0000785GO:GO:0003677GO:GO:0003682GO:GO:0003700GO:GO:0005634
GO:GO:0005737GO:GO:0006333GO:GO:0006355GO:GO:0030527Gramene:AT4G35570.1hmmpanther:PTHR13711hmmpanther:PTHR13711:SF222
HOGENOM:HOG000197860InParanoid:O49597IntAct:O49597InterPro:IPR009071KEGG:ath:AT4G35570OMA:YNMELANPaxDb:O49597
Pfam:O49597Pfam:PF00505Pfscan:PS50118PhylomeDB:O49597PIR:T04662PRIDE:O49597PRO:PR:O49597
PROSITE:PS50118ProteinModelPortal:O49597Proteomes:UP000006548RefSeq:NP_195282.1SMART:SM00398SMR:O49597STRING:3702.AT4G35570.1
SUPFAM:SSF47095TAIR:AT4G35570tair10-symbols:HMGB5tair10-symbols:HMGDtair10-symbols:NFD05tair10-symbols:NFD5UniGene:At.482
UniProt:O49597
Coordinates (TAIR10) chr4:-:16887363..16888184
Molecular Weight (calculated) 14203.60 Da
IEP (calculated) 10.08
GRAVY (calculated) -1.37
Length 125 amino acids
Sequence (TAIR10)
(BLAST)
001: MKDNQTEVES RSTDDRLKVR GNKVGKKTKD PNRPKKPPSP FFVFLDDFRK EFNLANPDNK SVGNVGRAAG KKWKTMTEEE RAPFVAKSQS KKTEYAVTMQ
101: QYNMELANGN KTTGDDEKQE KAADD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)