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AT4G35470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plant intracellular ras group-related LRR 4
Curator
Summary (TAIR10)
Encodes PIRL4, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
Computational
Description (TAIR10)
plant intracellular ras group-related LRR 4 (PIRL4); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 5 (TAIR:AT2G17440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:14981eggNOG:COG4886eggNOG:KOG0619EMBL:AL117188EMBL:AL161587EMBL:AY072324EMBL:AY128730
EMBL:AY849574EMBL:CP002687EnsemblPlants:AT4G35470EnsemblPlants:AT4G35470.1entrez:829699Gene3D:3.80.10.10GeneID:829699
Genevisible:Q9SVW8GO:GO:0005886Gramene:AT4G35470.1hmmpanther:PTHR23155hmmpanther:PTHR23155:SF501HOGENOM:HOG000242894InParanoid:Q9SVW8
IntAct:Q9SVW8InterPro:IPR001611InterPro:IPR003591InterPro:IPR032675iPTMnet:Q9SVW8KEGG:ath:AT4G35470OMA:CFFSRSN
PaxDb:Q9SVW8Pfam:PF00560Pfam:PF13516Pfam:PF13855Pfam:Q9SVW8Pfscan:PS51450PhylomeDB:Q9SVW8
PIR:T41744PRIDE:Q9SVW8PRO:PR:Q9SVW8PROSITE:PS51450ProteinModelPortal:Q9SVW8Proteomes:UP000006548RefSeq:NP_195272.1
SMART:SM00369SMR:Q9SVW8STRING:3702.AT4G35470.1SUPFAM:SSF52058SwissPalm:Q9SVW8TAIR:AT4G35470tair10-symbols:PIRL4
UniGene:At.22486UniProt:Q9SVW8
Coordinates (TAIR10) chr4:+:16846531..16848448
Molecular Weight (calculated) 60998.50 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.27
Length 549 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)