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AT4G35380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.812
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SEC7-like guanine nucleotide exchange family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SEC7-like guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT4G38200.1); Has 2864 Blast hits to 2569 proteins in 246 species: Archae - 2; Bacteria - 36; Metazoa - 1544; Fungi - 584; Plants - 258; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5307eggNOG:KOG0929EMBL:AL022604EMBL:AL161587EMBL:CP002687EnsemblPlants:AT4G35380EnsemblPlants:AT4G35380.1
entrez:829691Gene3D:1.10.1000.11Gene3D:1.25.10.10GeneID:829691Genevisible:F4JN05GO:GO:0005086GO:GO:0005829
GO:GO:0015031GO:GO:0016192GO:GO:0032012GO:GO:0032588GO:GO:0043547Gramene:AT4G35380.1hmmpanther:PTHR10663
hmmpanther:PTHR10663:SF108HOGENOM:HOG000181045InParanoid:F4JN05InterPro:IPR000904InterPro:IPR011989InterPro:IPR015403InterPro:IPR016024
InterPro:IPR023394InterPro:IPR032629InterPro:IPR032691InterPro:IPR032817iPTMnet:F4JN05KEGG:ath:AT4G35380KO:K18442
OMA:FSCIASHPaxDb:F4JN05Pfam:F4JN05Pfam:PF01369Pfam:PF09324Pfam:PF12783Pfam:PF16206
Pfam:PF16213Pfscan:PS50190PIR:T06119PRIDE:F4JN05PRO:PR:F4JN05PROSITE:PS50190ProteinModelPortal:F4JN05
Proteomes:UP000006548RefSeq:NP_195264.2SMART:SM00222STRING:3702.AT4G35380.1SUPFAM:SSF48371SUPFAM:SSF48425TAIR:AT4G35380
UniGene:At.2277UniProt:F4JN05
Coordinates (TAIR10) chr4:+:16819883..16825960
Molecular Weight (calculated) 190836.00 Da
IEP (calculated) 5.87
GRAVY (calculated) -0.03
Length 1706 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSTSQTLGGA TRCGRIIGPS LDKIIKNAAW RKHTYLVSSC KSVLDKLESL PDDFHDPSSV VSGLAASDAD SVLQPFLLSL ETAYSKVVEP SLDCAFKLFS
0101: LSILRGEIQS SKQDSILFKL VNAVSKVGAI AEEPIQLAVL RVLLAAVRSP CILIRGDCLL HVVKTCYNIY LGGLSGTTQI CAKSVLAQMM LVIFTRSEED
0201: SLDVSVKTIY VNELLTFTDK SVNEGSSVYF CQGFVNEVMA AGQGSPLPPP DVIQILLQNP ETETVMTPDS PSFRGYVANG EGDSETGDMS KVRQDAFLLF
0301: KNLCKLSMRF SSKENNDDQI MVRGKTLSLE LLKVIIDNGG SVWRTNESFI NAVKQYLCLS LLKNSAVSIM SIFQLQCAIF MSLLSKLRSV LKAEIGIFFP
0401: MIVLRVLENV LQPSYLQKMT VLNLLDKMSQ DPQLMVDIFV NYDCDVESSN ILERIVNGLL KTALGPPTGS STTLSPAQDS TFRNDSVKCL VNLAKAMGNW
0501: MDQQLKVNET VWPKGSQVYA SMDSNASQIS ELEGTISDCD SQPDTSNPEA YDASMLEQRR AYKIELQKGI SLFNRKPSKG VEFLISTKKI GSSPEEVASF
0601: LMKTAGLNGT VIGDYLGERD ELPLKVMHAY VDSFNFEKKD FVEAIRFFLR GFRLPGEAQK IDRIMEKFAE HYWKCNPGSF TSADTAYVLA YSVIMLNTDA
0701: HNNMVKDKMT KADFVRNNRG IDDGKDLPEE YLGSLYDRVV KEEIRMNSDT LAPQNKQVNG LNKLLGLDGI LNLVSWMQPD EKPHGANGRL IRDIQEQFQA
0801: KPEKSESVYH TVTDISILRF ILEVSWGPML AAFSVTIDQS DDRLATSLCL QGFRYAVHVT AVMGMQTQRD AFVTSMAKFT NLHCAADMKQ KNVDAVKAII
0901: TIAIEDGNHL HGSWEHILTC LSRIEHLQLL GEVSPSEKRY VPTKKAEVDD KKALGFPNLK KRGSFQNPSV MAVVRGGSYD STSLVKSVPK LVTPEQIKSF
1001: IANLNLLDQI GNFELNHVYA NSQRLNSEAI VSFVKALCKV SMSELQSPTD PRVFSLTKLV ETAHYNMNRI RLVWSRIWNV LSDFFVSVGL SENLSVAIFV
1101: MDSLRQLSMK FLEREELANY HFQHEFLRPF VVVMQKSSSA EIRELIVRCV SQMVLSRVSN VKSGWKNVFT VFTTAALDER KNIVLLAFET IEKIVRDHFH
1201: CIIETEITVY ADCIRCLITF TNSKFEGDIG FNTIEFLRFC ALKLEEGGLV LNEKLKNNTI SALKEDFSDT QSFTDLDEQV SYWIPLLTGL CKQVSDPRPA
1301: IRKRSIEVLF HILMDHGHLF TRPFWTGIFS SIILPVFNNI RSKTDMLFEE SVDSPSSASL DTEETTWDVE TSTLALQLLV DLLVKFFRSV RSQLPSVVSI
1401: IVGFIKSPFQ GSTGSGISVL LHLADGLARS ASEDEWREIF LALKEAASLT FAGFMKVLRT MDDIEDVETL SGQSVNIGDL DDDSLHIMSY VVSRTKKHID
1501: VLSQIVEVVS DLYRRNQFSL SASHVDILAD IFSCIASHAQ QLNTDTVLRR KFKRACSVQN LTEPQLLNFE NEAYKSYMMF LQDMVTCNPN VSKELDLESR
1601: LVTECAKIVK IYLKCTDPQQ QEQQQRKPVL WVLPMESDRV EEATARTSLL VSSLEALCSL EAESLKKHVS SFFPLLVDLV RTEHCSPQVP YVLSNVLKSC
1701: IGPILA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)