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AT4G35360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.946
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised conserved protein (UCP030210)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised conserved protein (UCP030210); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF89 (InterPro:IPR002791), Uncharacterised conserved protein UCP030210 (InterPro:IPR016949); BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein (UCP030210) (TAIR:AT2G17340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQNKeggNOG:KOG4584EMBL:AY062112EMBL:AY143933EMBL:CP002687EnsemblPlants:AT4G35360EnsemblPlants:AT4G35360.1
entrez:829689GeneID:829689Gramene:AT4G35360.1hmmpanther:PTHR12280hmmpanther:PTHR12280:SF31InterPro:IPR002791InterPro:IPR016949
KEGG:ath:AT4G35360OMA:CRIRELIPfam:PF01937PhylomeDB:Q8W4Q1PIRSF:PIRSF030210Proteomes:UP000006548RefSeq:NP_567984.1
SMR:Q8W4Q1STRING:3702.AT4G35360.1SUPFAM:SSF111321TAIR:AT4G35360UniGene:At.27351UniProt:Q8W4Q1
Coordinates (TAIR10) chr4:-:16812303..16814656
Molecular Weight (calculated) 41003.30 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.10
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MESDSEMVAL PLLPTPIESN YRACTIPYRF PSDNPRKATP TEISWIDLFS NSIPSFKERA ESDTTVPDAP VRAEKFAKRY AEILEDLKKD PESHGGPPDC
101: ILLCRIRELI LRELGFRDIF KKVKDEENAK AISLFPEVVR LSDAINDEGK RIENLVRGIF AGNIFDLGSA QLAEVFSKDG MSFLASCQNL VSRPWVIDDL
201: DNFQARWLKK PWKKAVIFVD NSGADIILGI LPFAREMLRL GMQVVLAANE LPSINDVTYI ELAEILSKLN DENGQLMGVD TSNLLIANSG NDLPVIDLAR
301: VSQEVAYLSS DADLVILEGM GRGIETNLYA QFKCDSLKIG MVKHPEVAQF LGGRLYDCVI KYNEVQI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)