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AT4G35260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:23444301 (2013): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:14671022 (2004): mitochondrion
  • PMID:11743115 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : isocitrate dehydrogenase 1
Curator
Summary (TAIR10)
Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.
Computational
Description (TAIR10)
isocitrate dehydrogenase 1 (IDH1); CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase subunit 2 (TAIR:AT2G17130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:14961BRENDA:1.1.1.41EC:1.1.1.41eggNOG:COG0473eggNOG:KOG0784EMBL:AF428360EMBL:AL022604
EMBL:AL161587EMBL:AY049260EMBL:AY084937EMBL:AY129494EMBL:CP002687EMBL:U81993EMBL:U82203
EnsemblPlants:AT4G35260EnsemblPlants:AT4G35260.1entrez:829679Gene3D:3.40.718.10GeneID:829679Genevisible:Q8LFC0GO:GO:0000287
GO:GO:0004449GO:GO:0005739GO:GO:0006099GO:GO:0006102GO:GO:0008270GO:GO:0051287Gramene:AT4G35260.1
gramene_pathway:1.1.1.41gramene_pathway:PWY-5690gramene_pathway:PWY-6549gramene_pathway:PWYQT-4481hmmpanther:PTHR11835hmmpanther:PTHR11835:SF51HOGENOM:HOG000021113
InParanoid:Q8LFC0IntAct:Q8LFC0InterPro:IPR001804InterPro:IPR004434InterPro:IPR024084KEGG:00020+1.1.1.41KEGG:ath:AT4G35260
KO:K00030OMA:HTEGELQPANTHER:PTHR11835PaxDb:Q8LFC0Pfam:PF00180Pfam:Q8LFC0PhylomeDB:Q8LFC0
PIR:T06131PRIDE:Q8LFC0PRO:PR:Q8LFC0ProteinModelPortal:Q8LFC0Proteomes:UP000006548Reactome:R-ATH-71403RefSeq:NP_195252.1
SMART:SM01329SMR:Q8LFC0STRING:3702.AT4G35260.1SUPFAM:SSF53659TAIR:AT4G35260tair10-symbols:IDH-Itair10-symbols:IDH1
TIGRfam:TIGR00175TIGRFAMs:TIGR00175UniGene:At.22461UniGene:At.74835UniProt:Q8LFC0
Coordinates (TAIR10) chr4:-:16774494..16776233
Molecular Weight (calculated) 39629.20 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.05
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRRSLTLLK NLARNANGSG IQTRSVTYMP RPGDGAPRAV TLIPGDGIGP LVTNAVEQVM EAMHAPIFFE KYDVHGEMSR VPPEVMESIR KNKVCLKGGL
101: KTPVGGGVSS LNVQLRKELD LFASLVNCFN LPGLPTRHEN VDIVVIRENT EGEYAGLEHE VVPGVVESLK VITKFCSERI AKYAFEYAYL NNRKKVTAVH
201: KANIMKLADG LFLESCREVA KKYPSITYNE IIVDNCCMQL VAKPEQFDVM VTPNLYGNLV ANTAAGIAGG TGVMPGGNVG ADHAVFEQGA SAGNVGKDKI
301: VLENKANPVA LLLSSAMMLR HLQFPSFADR LETAVKKVIA EGKCRTKDLG GTSTTQEVVD AVIAKLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)