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AT4G35250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G34460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0702eggNOG:KOG1203EMBL:AF462834EMBL:AL022604EMBL:AL161587EMBL:AY133542EMBL:CP002687
EnsemblPlants:AT4G35250EnsemblPlants:AT4G35250.1entrez:829678Gene3D:3.40.50.720GeneID:829678GO:GO:0003743GO:GO:0006413
GO:GO:0009507GO:GO:0009534GO:GO:0010207Gramene:AT4G35250.1gramene_plant_reactome:1119273gramene_plant_reactome:6875406hmmpanther:PTHR14194
hmmpanther:PTHR14194:SF81HOGENOM:HOG000111358IntAct:O65502InterPro:IPR008030InterPro:IPR016040KEGG:ath:AT4G35250OMA:AYMNTQD
Pfam:PF05368PhylomeDB:O65502PIR:T06132Proteomes:UP000006548RefSeq:NP_195251.1SMR:O65502STRING:3702.AT4G35250.1
SUPFAM:SSF51735TAIR:AT4G35250UniGene:At.21262UniProt:O65502
Coordinates (TAIR10) chr4:-:16771401..16773269
Molecular Weight (calculated) 43725.80 Da
IEP (calculated) 8.55
GRAVY (calculated) -0.10
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLRLPAQL VTRGNLIHHN SSSSSSGRLS WRRSLTPENT IPLFPSSSSS SLNRERSIVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)