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AT4G35110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Arabidopsis phospholipase-like protein (PEARLI 4) family; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G16900.1); Has 682 Blast hits to 587 proteins in 127 species: Archae - 27; Bacteria - 57; Metazoa - 143; Fungi - 39; Plants - 275; Viruses - 32; Other Eukaryotes - 109 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWA9eggNOG:ENOG411054DEMBL:AF385717EMBL:AL022023EMBL:AL161586EMBL:AY133668EMBL:BT000707
EMBL:CP002687EnsemblPlants:AT4G35110EnsemblPlants:AT4G35110.1EnsemblPlants:AT4G35110.2entrez:829663ExpressionAtlas:O49617GeneID:829663
GO:GO:0003682GO:GO:0007064GO:GO:0010468Gramene:AT4G35110.1Gramene:AT4G35110.2hmmpanther:PTHR21704hmmpanther:PTHR21704:SF19
HOGENOM:HOG000015108IntAct:O49617InterPro:IPR007942InterPro:IPR033031ncoils:CoilPANTHER:PTHR21704Pfam:PF05278
PhylomeDB:O49617PIR:T05781Proteomes:UP000006548RefSeq:NP_195237.1RefSeq:NP_849495.1STRING:3702.AT4G35110.3TAIR:AT4G35110
UniGene:At.2102UniProt:O49617
Coordinates (TAIR10) chr4:-:16712660..16713987
Molecular Weight (calculated) 43258.00 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.76
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFNRKAHPD CVYADNPFHE CASACLEKIA QGHVKKNTKK QSSRLLSFSG SFGRKKKESN SQPPTPLSAR PYQNGRGGFA NGNSPKVHHS VAPPASVKKK
101: IVSETKNSFT SSSSGDPDDF FNHKPEKKPS QTIPLSSNNL VDQSKVVSPK PGIQEHNGKI GEGGETRLFS FLSLPRSPGK ESNDDFSDDD DENNNEIGVE
201: LDLESVMSDT FVSVGKYRVR SGSSTILSAV IEKHGDIAQN CKLESDSMRS RYLECLCSLM QELRSTPVGQ LSKVKVKEML AVLKDLESVN IEVAWLRSVL
301: EEFAQSQEDV ENEKERHDGL VKAKREELEA QETDLVRMEK EVVEVKRRIE ETRAQMVEIE AERLRMEKMG FKMEKFKGKS FIDELL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)