suba logo
AT4G35090.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24130194 (2013): peroxisome
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
  • PMID:17951448 (2007): peroxisome
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12154131 (2002): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : catalase 2
Curator
Summary (TAIR10)
Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2 sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene. Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2).
Computational
Description (TAIR10)
catalase 2 (CAT2); FUNCTIONS IN: protein binding, catalase activity, cobalt ion binding; INVOLVED IN: in 10 processes; LOCATED IN: mitochondrion, cytosolic ribosome, stromule, peroxisome, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase (InterPro:IPR002226), Catalase related subgroup (InterPro:IPR018028), Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 1 (TAIR:AT1G20630.1); Has 6114 Blast hits to 6094 proteins in 1849 species: Archae - 22; Bacteria - 4292; Metazoa - 675; Fungi - 546; Plants - 461; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2443-MONOMERBioCyc:MetaCyc:AT4G35090-MONOMERBioGrid:14943EC:1.11.1.6eggNOG:COG0753eggNOG:KOG0047EMBL:AL022023
EMBL:AL161586EMBL:AY074301EMBL:AY113854EMBL:CP002687EMBL:X64271EMBL:X94447EnsemblPlants:AT4G35090
EnsemblPlants:AT4G35090.1entrez:829661ExpressionAtlas:P25819Gene3D:2.40.180.10GeneID:829661Genevisible:P25819GO:GO:0004096
GO:GO:0005739GO:GO:0005777GO:GO:0006979GO:GO:0006995GO:GO:0008219GO:GO:0009409GO:GO:0009416
GO:GO:0009507GO:GO:0009514GO:GO:0009648GO:GO:0009970GO:GO:0010319GO:GO:0016036GO:GO:0020037
GO:GO:0022626GO:GO:0042744GO:GO:0045454GO:GO:0050897GO:GO:0098869hmmpanther:PTHR11465hmmpanther:PTHR11465:SF19
HOGENOM:HOG000087852IntAct:P25819InterPro:IPR002226InterPro:IPR010582InterPro:IPR011614InterPro:IPR018028InterPro:IPR020835
InterPro:IPR024708InterPro:IPR024711KEGG:00380+1.11.1.6KEGG:00630+1.11.1.6OMA:TCAKFLDPANTHER:PTHR11465PaxDb:P25819
PeroxiBase:5141Pfam:P25819Pfam:PF00199Pfam:PF06628Pfscan:PS51402PhylomeDB:P25819PIR:T05779
PIRSF:PIRSF038928PRIDE:P25819PRINTS:PR00067PRO:PR:P25819PROSITE:PS00437PROSITE:PS00438PROSITE:PS51402
ProteinModelPortal:P25819Proteomes:UP000006548Reactome:R-ATH-3299685Reactome:R-ATH-74259RefSeq:NP_195235.1scanprosite:PS00437scanprosite:PS00438
SMART:SM01060SMR:P25819STRING:3702.AT4G35090.1SUPFAM:SSF56634SwissPalm:P25819TAIR:AT4G35090tair10-symbols:CAT2
UniGene:At.24350UniGene:At.64718UniProt:P25819
Coordinates (TAIR10) chr4:-:16700937..16703215
Molecular Weight (calculated) 56934.30 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.57
Length 492 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPYKYRPAS SYNSPFFTTN SGAPVWNNNS SMTVGPRGPI LLEDYHLVEK LANFDRERIP ERVVHARGAS AKGFFEVTHD ISNLTCADFL RAPGVQTPVI
101: VRFSTVIHER GSPETLRDPR GFAVKFYTRE GNFDLVGNNF PVFFIRDGMK FPDMVHALKP NPKSHIQENW RILDFFSHHP ESLNMFTFLF DDIGIPQDYR
201: HMDGSGVNTY MLINKAGKAH YVKFHWKPTC GVKSLLEEDA IRVGGTNHSH ATQDLYDSIA AGNYPEWKLF IQIIDPADED KFDFDPLDVT KTWPEDILPL
301: QPVGRMVLNK NIDNFFAENE QLAFCPAIIV PGIHYSDDKL LQTRVFSYAD TQRHRLGPNY LQLPVNAPKC AHHNNHHEGF MNFMHRDEEV NYFPSRYDQV
401: RHAEKYPTPP AVCSGKRERC IIEKENNFKE PGERYRTFTP ERQERFIQRW IDALSDPRIT HEIRSIWISY WSQADKSLGQ KLASRLNVRP SI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)