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AT4G35070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.901
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SBP (S-ribonuclease binding protein) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SBP (S-ribonuclease binding protein) family protein; CONTAINS InterPro DOMAIN/s: S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: S-ribonuclease binding protein 1 (TAIR:AT1G45976.1); Has 975 Blast hits to 929 proteins in 127 species: Archae - 2; Bacteria - 21; Metazoa - 288; Fungi - 13; Plants - 377; Viruses - 18; Other Eukaryotes - 256 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111S1XeggNOG:KOG1100EMBL:AK229374EMBL:BT015338
EMBL:BT015642EMBL:CP002687EnsemblPlants:AT4G35070EnsemblPlants:AT4G35070.1
entrez:829659ExpressionAtlas:Q66GR4GeneID:829659Gramene:AT4G35070.1
hmmpanther:PTHR10044hmmpanther:PTHR10044:SF112HOGENOM:HOG000239115ncoils:Coil
OMA:REMEMILPhylomeDB:Q66GR4Proteomes:UP000006548RefSeq:NP_195233.2
SMR:Q66GR4STRING:3702.AT4G35070.1TAIR:AT4G35070UniGene:At.31449
UniGene:At.74249UniProt:Q66GR4
Coordinates (TAIR10) chr4:+:16694488..16695387
Molecular Weight (calculated) 30251.30 Da
IEP (calculated) 5.69
GRAVY (calculated) -0.58
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)