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AT4G35020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAC-like 3
Curator
Summary (TAIR10)
A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.
Computational
Description (TAIR10)
RAC-like 3 (RAC3); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RAC-like GTP binding protein 5 (TAIR:AT1G75840.1); Has 24715 Blast hits to 24687 proteins in 684 species: Archae - 9; Bacteria - 73; Metazoa - 12739; Fungi - 3851; Plants - 2699; Viruses - 20; Other Eukaryotes - 5324 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0393EMBL:BT020318EMBL:BT020603EnsemblPlants:AT4G35020EnsemblPlants:AT4G35020.1EnsemblPlants:AT4G35020.2
EnsemblPlants:AT4G35020.3entrez:829654ExpressionAtlas:Q5PNX9Gene3D:3.40.50.300GeneID:829654GO:GO:0005525GO:GO:0005622
GO:GO:0007264GO:GO:0016020Gramene:AT4G35020.1Gramene:AT4G35020.2Gramene:AT4G35020.3hmmpanther:PTHR24072hmmpanther:PTHR24072:SF171
InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT4G35020KO:K04392OMA:HMAPITYPfam:PF00071
Pfam:Q38912Pfscan:PS51420PhylomeDB:Q5PNX9RefSeq:NP_001190916.1RefSeq:NP_001190917.1RefSeq:NP_195228.1SMR:Q5PNX9
STRING:3702.AT4G35020.1SUPFAM:SSF52540TAIR:AT4G35020tair10-symbols:ARAC3tair10-symbols:ATROP6tair10-symbols:RAC3tair10-symbols:RHO1PS
tair10-symbols:ROP6TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.20553UniProt:Q38912UniProt:Q5PNX9
Coordinates (TAIR10) chr4:+:16673176..16674540
Molecular Weight (calculated) 21729.30 Da
IEP (calculated) 9.81
GRAVY (calculated) -0.15
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVIVD GNTINLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLVSK ASYENVSKKW
101: VPELRHYAPG VPIILVGTKL DLRDDKQFFA EHPGAVPIST AQGEELKKLI GAPAYIECSA KTQQNVKAVF DAAIKVVLQP PKNKKKKKRK SQKGCSIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)