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AT4G34870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : rotamase cyclophilin 5
Curator
Summary (TAIR10)
belongs to cyclophilin family
Computational
Description (TAIR10)
rotamase cyclophilin 5 (ROC5); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 3 (TAIR:AT2G16600.1); Has 16787 Blast hits to 16755 proteins in 2701 species: Archae - 108; Bacteria - 6977; Metazoa - 2940; Fungi - 1375; Plants - 1301; Viruses - 4; Other Eukaryotes - 4082 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G34870-MONOMERBioGrid:14921EC:5.2.1.8eggNOG:COG0652eggNOG:KOG0865EMBL:AK228231EMBL:AL079347
EMBL:AL161586EMBL:AY054468EMBL:AY087606EMBL:BT006560EMBL:CP002687EMBL:U07276EMBL:U32186
EnsemblPlants:AT4G34870EnsemblPlants:AT4G34870.1entrez:829639Gene3D:2.40.100.10GeneID:829639Genevisible:Q42406GO:GO:0003755
GO:GO:0005774GO:GO:0005794GO:GO:0005829GO:GO:0005886GO:GO:0006457GO:GO:0007165GO:GO:0009507
GO:GO:0042277GO:GO:0048046Gramene:AT4G34870.1hmmpanther:PTHR11071hmmpanther:PTHR11071:SF295HOGENOM:HOG000065981InParanoid:Q42406
IntAct:Q42406InterPro:IPR002130InterPro:IPR020892InterPro:IPR024936InterPro:IPR029000KEGG:ath:AT4G34870KO:K01802
OMA:HYSIANMPANTHER:PTHR11071PaxDb:Q42406Pfam:PF00160Pfam:Q42406Pfscan:PS50072PhylomeDB:Q42406
PIR:S50141PIRSF:PIRSF001467PRIDE:Q42406PRINTS:PR00153PRO:PR:Q42406PROSITE:PS00170PROSITE:PS50072
ProteinModelPortal:Q42406Proteomes:UP000006548Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210RefSeq:NP_195213.1scanprosite:PS00170
SMR:Q42406STRING:3702.AT4G34870.1SUPFAM:SSF50891TAIR:AT4G34870tair10-symbols:ATCYP1tair10-symbols:ROC5UniGene:At.1582
UniGene:At.421UniProt:Q42406
Coordinates (TAIR10) chr4:+:16614451..16614969
Molecular Weight (calculated) 18379.10 Da
IEP (calculated) 8.98
GRAVY (calculated) -0.20
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNPRVFFDM SLSGTPIGRI EMELFADTTP NTAENFRALC TGEKGMGKLG KPLHFKGSIF HRVIPGFMCQ GGDFTAKNGT GGESIYGAKF KDENFIKKHT
101: GAGILSMANS GPNTNGSQFF ICTDKTSWLD GKHVVFGQVV KGLDVVKAIE KVGSDSGKTS KVVTITDCGQ LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)