suba logo
AT4G34830.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:22318864 (2012): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Encodes MRL1, a conserved pentatricopeptide repeat protein, required for stabilization of rbcL mRNA.
Computational
Description (TAIR10)
MATURATION OF RBCL 1 (MRL1); INVOLVED IN: mRNA stabilization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1); Has 45662 Blast hits to 13867 proteins in 283 species: Archae - 3; Bacteria - 43; Metazoa - 608; Fungi - 635; Plants - 42548; Viruses - 0; Other Eukaryotes - 1825 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK226737EMBL:AK230279EMBL:AL079347EMBL:AL161586EMBL:BT012281
EMBL:CP002687EnsemblPlants:AT4G34830EnsemblPlants:AT4G34830.1entrez:829635Gene3D:1.25.40.10GeneID:829635Genevisible:Q0WLC6
GO:GO:0009507GO:GO:0048255Gramene:AT4G34830.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF364HOGENOM:HOG000243354InParanoid:Q0WLC6
InterPro:IPR002885InterPro:IPR011990InterPro:IPR033443KEGG:ath:AT4G34830OMA:CLQMFDNPaxDb:Q0WLC6Pfam:PF01535
Pfam:PF12854Pfam:PF13041Pfam:PF13812Pfam:PF17177Pfam:Q0WLC6Pfscan:PS51375PhylomeDB:Q0WLC6
PIR:T10228PIR:T10229PRIDE:Q0WLC6PRO:PR:Q0WLC6PROSITE:PS51375ProteinModelPortal:Q0WLC6Proteomes:UP000006548
RefSeq:NP_195209.2SMR:Q0WLC6STRING:3702.AT4G34830.1TAIR:AT4G34830tair10-symbols:MRL1TIGRfam:TIGR00756TIGRFAMs:TIGR00756
TMHMM:TMhelixUniGene:At.31467UniProt:Q0WLC6
Coordinates (TAIR10) chr4:-:16599976..16605994
Molecular Weight (calculated) 119778.00 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.25
Length 1089 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEVTSTTFIS TTRSSKYLTL TSYSPVILPA STLRRDFLGC CHSLRPSPHL RTRAGKRNSR RSSIRSPRLV VRASIDSGLI LIVVAVTAFS AIAFAYCQST
0101: FRKRKSSDEV ATVHGGKNSA ENRREIHGDI HEGNPVEINV GFRKVEEESV NLLEEEKAHQ IHEVAVMDYD SVSAEDSQFA VASVTTVATA HTLIDESFSS
0201: SIVNGSVALE SATFGVKTPE KQVGNSEDQK GLEHDFSQAV VGIHSIASPQ VVDDTRALEY EYNGLLQKPL EYSIFAESKR EEIHTFYGSN HSSAKSSRLP
0301: SLKAVSPAVT SATNSLFLDH KNNGVIDTQF PGQSSGQATG DVQEENLVAH SNGGVSHIRK DVKGDWKFPS DGKHVGHQID ESMPQFPARN FELHNSNGRS
0401: PETSDAYNRL LRDGRIKDCI SLLEDLDQRD LLDMDKIYHA SFFKACKKQR AVKEAFRFTK LILNPTMSTF NMLMSVCASS QDIEGARGVL RLVQESGMTA
0501: DCKLYTTLIS SCAKSGKVDA MFEVFHQMSN SGVEANLHTF GALIDGCARA GQVAKAFGAY GILRSKNVKP DRVVFNALIS ACGQSGAVDR AFDVLAEMKA
0601: ETHPIDPDHI SIGALMKACC NAGQVERAKE VYQMIHKYGI RGTPEVYTIA VNSCSKSGDW DFACSIYKDM KEKDVTPDEV FFSALIDVAG HAKMLDEAFG
0701: ILQDAKSQGI RLGTISYSSL MGACCNAKDW KKALELYEKI KSIKLRPTIS TMNALITALC EGNQLPKAME YLDEIKTLGL KPNTITYSML MLASERKDDF
0801: EVSFKLLSQA KGDGVSPNLI MCRCITSLCK RRFEKACAGG EPVVSFKSGR PQIENKWTSM ALMVYRETIS GGTVPTTEVV SQVLGCLQLP HDAALRDRLI
0901: STLGINISSQ KQHNIFPLVD GFGEYDPRAF SLLEEATSLG VLPSVSFNKI PLFFDTTELP KNVAEVYLLT IFKGLKHRLA AGAKIPHINL IISIQEKEIR
1001: TPEGEKTIDL TGRVGQEIGA LLRRLDIPYH RKDSRLRING VSLKNWFQPK LDSPFSGGKP GDLRSSQVPL GNQISRQQRS IRLGNLSLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)