suba logo
AT4G34730.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosome-binding factor A family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ribosome-binding factor A family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome-binding factor A, conserved site (InterPro:IPR020053), K homology-like, alpha/beta (InterPro:IPR015946), Ribosome-binding factor A (InterPro:IPR000238); Has 4827 Blast hits to 4826 proteins in 1979 species: Archae - 0; Bacteria - 4129; Metazoa - 5; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 652 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0858eggNOG:ENOG410IVWBEMBL:AL023094EMBL:AL161586EMBL:BT002011EMBL:BT006250EMBL:CP002687
EnsemblPlants:AT4G34730EnsemblPlants:AT4G34730.1entrez:829625Gene3D:3.30.300.20GeneID:829625Genevisible:O65693GO:GO:0006364
GO:GO:0009507GO:GO:0042254Gramene:AT4G34730.1HAMAP:MF_00003hmmpanther:PTHR33515HOGENOM:HOG000218325InParanoid:O65693
InterPro:IPR000238InterPro:IPR015946InterPro:IPR020053InterPro:IPR023799KEGG:ath:AT4G34730KO:K02834OMA:FIRCMAN
PaxDb:O65693Pfam:O65693Pfam:PF02033PhylomeDB:O65693PIR:T05293PRIDE:O65693PRO:PR:O65693
ProDom:PD007327PROSITE:PS01319ProteinModelPortal:O65693Proteomes:UP000006548RefSeq:NP_195199.2scanprosite:PS01319SMR:O65693
STRING:3702.AT4G34730.1SUPFAM:SSF89919TAIR:AT4G34730TIGRfam:TIGR00082TIGRFAMs:TIGR00082UniGene:At.45958UniGene:At.47534
UniProt:O65693
Coordinates (TAIR10) chr4:-:16570019..16571274
Molecular Weight (calculated) 24290.20 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.39
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MPNLLHTNQS HFFFLHHPPI YTVSSKTQAF HFPQSMAPVN LRTNLSVRRT VRCMANPRRV KMVAKQIMRE LSDMLLTDTV LQHAVLPEAA LGADRYLSSL
101: TTISDVEVSN DLQVVKVYVS VFGDDRGKDV AIAGLKSKAK YVRSELGKRM KLRLTPEVRF IEDEAMERGS RVIAILDKIK AEKGSGEGKT EPSDSTEDDQ
201: DWEVDDPDED IIYVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)