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AT4G34720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ATPase, F0/V0 complex, subunit C protein
Curator
Summary (TAIR10)
vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1)
Computational
Description (TAIR10)
AVA-P1; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2722 Blast hits to 2495 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 344; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).
Protein Annotations
BioGrid:14906BioGrid:15327eggNOG:COG0636eggNOG:KOG0232EMBL:AF412097EMBL:AL035679EMBL:AL161594
EMBL:AY049249EMBL:AY059836EMBL:AY087112EMBL:AY090271EMBL:AY093249EMBL:CP002687EMBL:L44583
EnsemblPlants:AT2G16510.1EnsemblPlants:AT4G34720EnsemblPlants:AT4G34720.1EnsemblPlants:AT4G38920.1entrez:816150entrez:829624entrez:830047
ExpressionAtlas:P0DH93GeneID:816150GeneID:829624GeneID:830047Genevisible:P0DH93GO:GO:0000220GO:GO:0005773
GO:GO:0007035GO:GO:0015991GO:GO:0016021GO:GO:0046961Gramene:AT2G16510.1Gramene:AT4G34720.1Gramene:AT4G38920.1
hmmpanther:PTHR10263hmmpanther:PTHR10263:SF13InParanoid:P0DH93InterPro:IPR000245InterPro:IPR002379InterPro:IPR011555KEGG:ath:AT2G16510
KEGG:ath:AT4G34720KEGG:ath:AT4G38920KO:K02155PaxDb:P0DH92PaxDb:P0DH93Pfam:P0DH92Pfam:P0DH93
Pfam:P0DH94Pfam:PF00137PhylomeDB:P0DH93PIR:S60130PRIDE:P0DH93PRINTS:PR00122PRO:PR:P0DH93
ProteinModelPortal:P0DH93Proteomes:UP000006548Reactome:R-ATH-77387Reactome:R-ATH-917977RefSeq:NP_179244.1RefSeq:NP_195198.1RefSeq:NP_195603.1
SMR:P0DH93SMR:P0DH94STRING:3702.AT4G38920.1SUPFAM:0035882SUPFAM:SSF81333TAIR:AT4G38920tair10-symbols:ATVHA-C1
tair10-symbols:AVA-P1tair10-symbols:VHA-C1TIGRfam:TIGR01100TIGRFAMs:TIGR01100TMHMM:TMhelixUniGene:At.20761UniGene:At.23899
UniGene:At.40263UniProt:P0DH92UniProt:P0DH93UniProt:P0DH94
Coordinates (TAIR10) chr4:-:16568223..16569165
Molecular Weight (calculated) 16572.70 Da
IEP (calculated) 8.68
GRAVY (calculated) 0.95
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLA
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)