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AT4G34620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
FP Images

Arabidopsis cell culture (mitochondrial marker)

At4g34620-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At4g34620-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : small subunit ribosomal protein 16
Curator
Summary (TAIR10)
Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype
Computational
Description (TAIR10)
small subunit ribosomal protein 16 (SSR16); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis, embryo development ending in seed dormancy; LOCATED IN: ribosome, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: Ribosomal protein S16 family protein (TAIR:AT5G56940.1); Has 8683 Blast hits to 8683 proteins in 3031 species: Archae - 0; Bacteria - 5404; Metazoa - 128; Fungi - 129; Plants - 717; Viruses - 0; Other Eukaryotes - 2305 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0228eggNOG:KOG3419EMBL:AF412081EMBL:AL023094EMBL:AL161585EMBL:AY045607EMBL:AY048218
EMBL:AY052220EMBL:AY086956EMBL:AY143795EMBL:CP002687EnsemblPlants:AT4G34620EnsemblPlants:AT4G34620.1entrez:829614
Gene3D:3.30.1320.10GeneID:829614GO:GO:0003735GO:GO:0005840GO:GO:0006412GO:GO:0009507GO:GO:0009536
GO:GO:0009793GO:GO:0009941Gramene:AT4G34620.1HAMAP:MF_00385hmmpanther:PTHR12919hmmpanther:PTHR12919:SF23HOGENOM:HOG000246720
InterPro:IPR000307InterPro:IPR023803KEGG:ath:AT4G34620KO:K02959OMA:GQKKAPFPANTHER:PTHR12919Pfam:PF00886
PhylomeDB:O65686PIR:T05282Proteomes:UP000006548RefSeq:NP_195188.1SMR:O65686STRING:3702.AT4G34620.1SUPFAM:SSF54565
TAIR:AT4G34620tair10-symbols:SSR16TIGRfam:TIGR00002TIGRFAMs:TIGR00002UniGene:At.22916UniProt:O65686
Coordinates (TAIR10) chr4:-:16535084..16536092
Molecular Weight (calculated) 12699.50 Da
IEP (calculated) 10.42
GRAVY (calculated) -0.37
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVKIRLARL GCKHRPFYRV VVADEKSRRD GKQIEVLGFY DPLQGKEDAD RVSLKFDRIK YWLSVGAQPT DTVESMLFRA GLIPPKPMVV VGSKNGQKST
101: SQHVSPITGE ILN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)