suba logo
AT4G34610.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BEL1-like homeodomain 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEL1-like homeodomain 6 (BLH6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 7 (TAIR:AT2G16400.1); Has 4819 Blast hits to 4819 proteins in 327 species: Archae - 0; Bacteria - 2; Metazoa - 1855; Fungi - 314; Plants - 2477; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Protein Annotations
BioGrid:14895eggNOG:ENOG410XPMQeggNOG:KOG0773EMBL:AL023094EMBL:AL161585EMBL:BT012291EMBL:CP002687
EnsemblPlants:AT4G34610EnsemblPlants:AT4G34610.1EnsemblPlants:AT4G34610.2entrez:829613Gene3D:1.10.10.60GeneID:829613Genevisible:O65685
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0044212Gramene:AT4G34610.1Gramene:AT4G34610.2hmmpanther:PTHR11850
hmmpanther:PTHR11850:SF65HOGENOM:HOG000239679InParanoid:O65685IntAct:O65685InterPro:IPR001356InterPro:IPR006563InterPro:IPR008422
InterPro:IPR009057KEGG:ath:AT4G34610ncoils:CoilOMA:EFTENDSPaxDb:O65685Pfam:O65685Pfam:PF05920
Pfam:PF07526Pfscan:PS50071PhylomeDB:O65685PIR:T05281PRIDE:O65685PRO:PR:O65685PROSITE:PS00027
PROSITE:PS50071ProteinModelPortal:O65685Proteomes:UP000006548RefSeq:NP_001119116.1RefSeq:NP_195187.1SMART:SM00389SMART:SM00574
SMR:O65685STRING:3702.AT4G34610.1SUPFAM:SSF46689TAIR:AT4G34610tair10-symbols:BLH6UniGene:At.50395UniGene:At.69176
UniProt:O65685
Coordinates (TAIR10) chr4:-:16530546..16532498
Molecular Weight (calculated) 59612.60 Da
IEP (calculated) 5.84
GRAVY (calculated) -0.74
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MENYPETQFI PGDSMIQNAI VSYSEESAGR ERRTEANNVS ASQERQALSR FGGVPQMQNI GQDFGSWRDQ ASDRNGFQLM SAMAGATGIL QTGQGLSLSL
101: GSQILPGIHQ ISHQNMAPRG NEYATQSFPG GNQNLDVVRT IPNSKYLKAA QQLLDEAVNV KKALKQFQAE GDKNNENPQE PNQSTQDSST NPPADISQSE
201: RQEMQSKLTK LLSMLDEVDR RYKQYYQQMQ IVVSSFDVIA GYGAAKPYTA LALQTISRHF RSLRDAISGQ ILVLRKCLGE QQDGSDGKRV GIISRLKYVD
301: QHLRQQRGFM QPQAWRPQRG LPENSVLILR AWLFEHFLHP YPKDSDKIML ARQTGLSRGQ VSNWFINARV RLWKPMVEEI YKEEFTENDS NSSSENTPKM
401: SEIGPVAADD EDRAREFSQD QTKPDHGHGY GEETRGMVQG SHMDGRRFMA VEPTYHVADT SRLGRGDVSL TLGLQNSQGQ DNVVAMSSEA YNNFSGVDIY
501: ENAIPGDEME YVNPGSRQNR INSSQLVHDF VA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)