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AT4G34600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16385.1); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5EReggNOG:ENOG410ZFRPEMBL:AL023094EMBL:AL161585EMBL:BT010809EMBL:BT014676EMBL:CP002687
EnsemblPlants:AT4G34600EnsemblPlants:AT4G34600.1entrez:829612GeneID:829612GO:GO:0009860Gramene:AT4G34600.1hmmpanther:PTHR35290
hmmpanther:PTHR35290:SF2HOGENOM:HOG000237739KEGG:ath:AT4G34600OMA:YSQEDDHPhylomeDB:O65684PIR:T05280Proteomes:UP000006548
RefSeq:NP_195186.1TAIR:AT4G34600TMHMM:TMhelixUniGene:At.27648UniGene:At.75091UniProt:O65684
Coordinates (TAIR10) chr4:+:16529280..16529958
Molecular Weight (calculated) 9437.67 Da
IEP (calculated) 10.17
GRAVY (calculated) -0.07
Length 83 amino acids
Sequence (TAIR10)
(BLAST)
1: MGLLPLVKKL GFIIFLLVSA SAFALCSAGR SSILIYSQED DHPEVVERRI HEHERILRMN SRDYGHSSPK PKLVRPPFKL IPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)