suba logo
AT4G34450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative; FUNCTIONS IN: clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Coatomer, gamma subunit, appendage, Ig-like subdomain (InterPro:IPR013040), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Coatomer, gamma subunit (InterPro:IPR017106), Coatomer, gamma subunit , appendage (InterPro:IPR014863), Armadillo-type fold (InterPro:IPR016024), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: structural molecules (TAIR:AT2G16200.1); Has 1647 Blast hits to 1638 proteins in 222 species: Archae - 2; Bacteria - 2; Metazoa - 707; Fungi - 446; Plants - 176; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).
Protein Annotations
BioGrid:14878eggNOG:COG5240eggNOG:KOG1078EMBL:AK221839
EMBL:AK226533EMBL:AK317645EMBL:AL023094EMBL:AL161585
EMBL:CP002687EnsemblPlants:AT4G34450EnsemblPlants:AT4G34450.1entrez:829596
ExpressionAtlas:Q0WW26Gene3D:1.25.10.10Gene3D:2.60.40.1480Gene3D:3.30.310.30
GeneID:829596Genevisible:Q0WW26GO:GO:0005198GO:GO:0005829
GO:GO:0005886GO:GO:0006886GO:GO:0009506GO:GO:0009507
GO:GO:0016020GO:GO:0016192GO:GO:0030126Gramene:AT4G34450.1
hmmpanther:PTHR10261hmmpanther:PTHR10261:SF5HOGENOM:HOG000184434InParanoid:Q0WW26
IntAct:Q0WW26InterPro:IPR002553InterPro:IPR009028InterPro:IPR011989
InterPro:IPR013040InterPro:IPR013041InterPro:IPR015873InterPro:IPR016024
InterPro:IPR017106InterPro:IPR032154iPTMnet:Q0WW26KEGG:ath:AT4G34450
KO:K17267OMA:NHLVFQFPANTHER:PTHR10261PaxDb:Q0WW26
Pfam:PF01602Pfam:PF08752Pfam:PF16381Pfam:Q0WW26
PhylomeDB:Q0WW26PIR:T05265PIRSF:PIRSF037093PRIDE:Q0WW26
PRO:PR:Q0WW26ProteinModelPortal:Q0WW26Proteomes:UP000006548Reactome:R-ATH-199997
Reactome:R-ATH-6807878RefSeq:NP_195171.2SMR:Q0WW26STRING:3702.AT4G34450.1
SUPFAM:SSF48371SUPFAM:SSF49348SUPFAM:SSF55711SwissPalm:Q0WW26
TAIR:AT4G34450UniGene:At.25572UniProt:B9DHT9UniProt:Q0WW26
Coordinates (TAIR10) chr4:+:16471956..16476795
Molecular Weight (calculated) 98496.20 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.10
Length 886 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQPLVKKDD DHDDELEYSP FMGIEKGAVL QEARVFNDPQ VDPRRCSQVI TKLLYLLNQG ESFTKVEATE VFFSVTKLFQ SKDTGLRRMV YLIIKELSPS
101: SDEVIIVTSS LMKDMNSKID MYRANAIRVL CRIIDGTLLT QIERYLKQAI VDKNPVVSSA ALVSGLHLLK TNPEIVKRWS NEVQEGIQSR SALVQFHALA
201: LLHQIRQNDR LAVSKLVGSL TRGSVRSPLA QCLLIRYTSQ VIRDMANHGQ SGERPFYEFL ESCLRHKAEM VILEAARAIT ELDGVTSREL TPAITVLQLF
301: LSSPRPVLRF AAVRTLNKVA MTHPMAVTNC NIDMESLISD QNRSIATLAI TTLLKTGNES SVERLMKQIT NFMSDIADEF KIVVVDAIRS LCVKFPLKYR
401: SLMTFLSNIL REEGGFEYKR AIVDSIVTII RDIPDAKESG LLHLCEFIED CEFTYLSTQI LHFLGIEGPN TSDPSKYIRY IYNRVHLENA TVRAAAVSTL
501: AKFGFMVESL KPRITVLLKR CIYDSDDEVR DRATLYLSVL GGDGTVDTDK ESKDFLFGSL EVPLVNMETS LKNYEPSEEA FDINSVPKEV KSQPLAEKKA
601: QGKKPTGLGA PPAAPASGFD GYERLLSSIP EFAAFGKLFK SSLPVELTEA ETEYAVNVVK HIFDSHVVFQ YNCTNTIPEQ LLERVNVIVD ASEAEEFSEV
701: TSKALNSLPY DSPGQAFVVF EKPAGVPAVG KFSNTLTFVV KEVDPSTGEA EDDGVEDEYQ LEDLEVVAGD YMVKVGVSNF RNAWESMDEE DERVDEYGLG
801: QRESLGEAVK AVMDLLGMQT CEGTETIPLN ARSHTCLLSG VYIGNVKVLV RAQFGMDSSK DIAMKLTVRA EDVSVAEAIH EIVASG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)