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AT4G34410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : redox responsive transcription factor 1
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational
Description (TAIR10)
redox responsive transcription factor 1 (RRTF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 6148 Blast hits to 5821 proteins in 258 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6132; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:14873eggNOG:ENOG410IZPTeggNOG:ENOG410YN6XEMBL:AF325091
EMBL:AL035521EMBL:AL161585EMBL:AY064151EMBL:AY120700
EMBL:CP002687EnsemblPlants:AT4G34410EnsemblPlants:AT4G34410.1entrez:829591
Gene3D:3.30.730.10GeneID:829591Genevisible:Q9SZ06GO:GO:0001944
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009873GO:GO:0010200GO:GO:0050832GO:GO:0051301
Gramene:AT4G34410.1hmmpanther:PTHR31677hmmpanther:PTHR31677:SF11HOGENOM:HOG000243182
InParanoid:Q9SZ06InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT4G34410
OMA:MHYPNNRPaxDb:Q9SZ06Pfam:PF00847Pfam:Q9SZ06
Pfscan:PS51032PhylomeDB:Q9SZ06PIR:T04787PRINTS:PR00367
PRO:PR:Q9SZ06PROSITE:PS51032ProteinModelPortal:Q9SZ06Proteomes:UP000006548
RefSeq:NP_195167.1SMART:SM00380SMR:Q9SZ06STRING:3702.AT4G34410.1
SUPFAM:SSF54171TAIR:AT4G34410tair10-symbols:RRTF1UniGene:At.48936
UniGene:At.66607UniProt:Q9SZ06
Coordinates (TAIR10) chr4:+:16451992..16452798
Molecular Weight (calculated) 29448.20 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.71
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MHYPNNRTEF VGAPAPTRYQ KEQLSPEQEL SVIVSALQHV ISGENETAPC QGFSSDSTVI SAGMPRLDSD TCQVCRIEGC LGCNYFFAPN QRIEKNHQQE
101: EEITSSSNRR RESSPVAKKA EGGGKIRKRK NKKNGYRGVR QRPWGKFAAE IRDPKRATRV WLGTFETAED AARAYDRAAI GFRGPRAKLN FPFVDYTSSV
201: SSPVAADDIG AKASASASVS ATDSVEAEQW NGGGGDCNME EWMNMMMMMD FGNGDSSDSG NTIADMFQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)