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AT4G34400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G06160.2); Has 17257 Blast hits to 10862 proteins in 685 species: Archae - 48; Bacteria - 3184; Metazoa - 5526; Fungi - 2028; Plants - 1203; Viruses - 203; Other Eukaryotes - 5065 (source: NCBI BLink).
Protein Annotations
BioGrid:14872eggNOG:ENOG410JVD4eggNOG:ENOG411060TEMBL:AB493717EMBL:AL035521EMBL:AL161585EMBL:CP002687
EnsemblPlants:AT4G34400EnsemblPlants:AT4G34400.1entrez:829590Gene3D:2.40.330.10GeneID:829590Genevisible:Q9SZ05GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT4G34400.1hmmpanther:PTHR31920HOGENOM:HOG000097078InParanoid:Q9SZ05
IntAct:Q9SZ05InterPro:IPR003340InterPro:IPR015300iPTMnet:Q9SZ05KEGG:ath:AT4G34400OMA:RICKRNKPaxDb:Q9SZ05
Pfam:PF02362Pfam:Q9SZ05Pfscan:PS50863PhylomeDB:Q9SZ05PIR:T04786PRIDE:Q9SZ05PRO:PR:Q9SZ05
PROSITE:PS50863ProteinModelPortal:Q9SZ05Proteomes:UP000006548RefSeq:NP_195166.2SMART:SM01019SMR:Q9SZ05STRING:3702.AT4G34400.1
SUPFAM:SSF101936TAIR:AT4G34400UniGene:At.54601UniProt:Q9SZ05
Coordinates (TAIR10) chr4:+:16445323..16447596
Molecular Weight (calculated) 45680.30 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.79
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSMASNDF QLPPRFFTVF VSHFSSEFMV IPVSYYDHIP HRFPKTVILR GPGGCSWKVA TEIKDDEVLF SQGWPKFVRD NTLNDGDFLT FAYNGAHIFE
101: VSIFRGYDAC KEISEVTELE EEEEDSVISL SSEDTDTGAK SEMKNTVPEG RDKGKSKVEV VEDSDDDEEE DSVYSESSEE TETDTDSEFK VAKPTIPKSQ
201: KKGKKKEQVV ESSDDEEDEE EDSDSDYIET FGQLDIEENS ISEEDSSYAP DKEDTATASF VKPKVANKVA NLKRKEAAKK RKKVDPMIKN PERYLDDPKN
301: IHFETNVKNR LYELLVHAQL VKDYCLRFGD YVNYIDRFGK LSAKTAKWKD QRVCIKRWMR ICKRNKLKKE DRILCELLRK GTFVYAIKLH VIRGKDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)