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AT4G34380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.778
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G18950.1); Has 30752 Blast hits to 16743 proteins in 595 species: Archae - 24; Bacteria - 4552; Metazoa - 10989; Fungi - 7521; Plants - 3775; Viruses - 0; Other Eukaryotes - 3891 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1ZeggNOG:KOG4155EMBL:AK118385EMBL:AL035521EMBL:AL161585EMBL:BT005888EMBL:CP002687
EnsemblPlants:AT4G34380EnsemblPlants:AT4G34380.1entrez:829588Gene3D:2.130.10.10GeneID:829588Gramene:AT4G34380.1hmmpanther:PTHR22844
hmmpanther:PTHR22844:SF145HOGENOM:HOG000236376IntAct:Q9SZ03InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR020472
KEGG:ath:AT4G34380OMA:SINAHEDPfam:PF00400Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9SZ03PIR:T04784
PRINTS:PR00320PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_195164.1SMART:SM00320SMR:Q9SZ03
STRING:3702.AT4G34380.1SUPFAM:SSF50978TAIR:AT4G34380UniGene:At.31507UniProt:Q9SZ03
Coordinates (TAIR10) chr4:+:16438835..16440322
Molecular Weight (calculated) 54308.30 Da
IEP (calculated) 9.72
GRAVY (calculated) -0.47
Length 495 amino acids
Sequence (TAIR10)
(BLAST)
001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)