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AT4G34290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22797472 (2012): plastid plastid stroma
  • PMID:26987276 (2016): plastid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SWIB/MDM2 domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G14880.1); Has 1224 Blast hits to 1123 proteins in 258 species: Archae - 0; Bacteria - 216; Metazoa - 147; Fungi - 184; Plants - 430; Viruses - 12; Other Eukaryotes - 235 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5531eggNOG:KOG1946EMBL:AL035521EMBL:AL161585EMBL:BT001198EMBL:CP002687EnsemblPlants:AT4G34290
EnsemblPlants:AT4G34290.1entrez:829579Gene3D:1.10.245.10GeneID:829579Gramene:AT4G34290.1hmmpanther:PTHR13844hmmpanther:PTHR13844:SF8
InterPro:IPR003121InterPro:IPR019835KEGG:ath:AT4G34290OMA:TTKTREPPfam:PF02201PhylomeDB:Q9SYZ4PIR:T04775
Proteomes:UP000006548RefSeq:NP_195155.1SMART:SM00151SMR:Q9SYZ4STRING:3702.AT4G34290.1SUPFAM:SSF47592TAIR:AT4G34290
UniGene:At.2612UniProt:Q9SYZ4
Coordinates (TAIR10) chr4:+:16410883..16412122
Molecular Weight (calculated) 15999.50 Da
IEP (calculated) 10.48
GRAVY (calculated) -0.29
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)