suba logo
AT4G34270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.965
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TIP41-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TIP41-like family protein; CONTAINS InterPro DOMAIN/s: TIP41-like protein (InterPro:IPR007303); Has 348 Blast hits to 346 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 127; Plants - 55; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
DNASU:829577eggNOG:ENOG410XT96eggNOG:KOG3224EMBL:AY074349
EMBL:AY091389EMBL:CP002687EnsemblPlants:AT4G34270EnsemblPlants:AT4G34270.1
entrez:829577GeneID:829577GO:GO:0005829Gramene:AT4G34270.1
hmmpanther:PTHR21021hmmpanther:PTHR21021:SF16HOGENOM:HOG000213547InterPro:IPR007303
KEGG:ath:AT4G34270KO:K17607OMA:ACAQEWQPfam:PF04176
PhylomeDB:Q8VXY4Proteomes:UP000006548RefSeq:NP_195153.2STRING:3702.AT4G34270.1
TAIR:AT4G34270UniGene:At.31518UniProt:Q8VXY4
Coordinates (TAIR10) chr4:-:16404138..16406153
Molecular Weight (calculated) 33076.60 Da
IEP (calculated) 5.29
GRAVY (calculated) -0.31
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: METVVDKDVL KSSGAELLPD GRRGLRIHDW EIETLRGTIL TSLAVEEWEK KLKTSHLPEM VFGENALVLK HLGSNTKIHF NAFDALAGWK QEGLPPVEVP
101: AAAQWKFRSK PSQQVILDYD YTFTTPYCGS EVVEKDKETV EAKANPKGEA TLQWENCEDQ IDLAALSLKE PILFYDEVVL YEDELADNGV SLLTVKVRVM
201: PSSWFLLLRF WLRVDGVLMR LRETRMHYRF GEDEAPTVLR ENCWREATFQ SLSAKGYPVD LAVWSDPSSI SQRLPVIKHT TQKLKIPSKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)