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AT4G34200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22923678 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:17137349 (2006): mitochondrion
  • PMID:14671022 (2004): mitochondrion
FP Images

Arabidopsis cell culture (plastidal marker)

At4g34200-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (plastidal marker)

At4g34200-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : D-3-phosphoglycerate dehydrogenase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo sac development arrest 9 (EDA9); FUNCTIONS IN: ATP binding; INVOLVED IN: megagametogenesis; LOCATED IN: mitochondrion, chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT3G19480.1); Has 30608 Blast hits to 30602 proteins in 2772 species: Archae - 489; Bacteria - 18520; Metazoa - 741; Fungi - 1175; Plants - 586; Viruses - 5; Other Eukaryotes - 9092 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G34200-MONOMERBioGrid:14850EC:1.1.1.95eggNOG:COG0111eggNOG:KOG0068EMBL:AL021961EMBL:AL161585
EMBL:AY063810EMBL:AY084236EMBL:AY150462EMBL:CP002687EnsemblPlants:AT4G34200EnsemblPlants:AT4G34200.1entrez:829568
Gene3D:3.30.1330.90Gene3D:3.40.50.720GeneID:829568Genevisible:O49485GO:GO:0004617GO:GO:0005524GO:GO:0005739
GO:GO:0006564GO:GO:0009070GO:GO:0009507GO:GO:0009536GO:GO:0009555GO:GO:0009561GO:GO:0009570
GO:GO:0009793GO:GO:0016020GO:GO:0016597GO:GO:0051287Gramene:AT4G34200.1hmmpanther:PTHR10996hmmpanther:PTHR10996:SF159
HOGENOM:HOG000136693InParanoid:O49485IntAct:O49485InterPro:IPR002912InterPro:IPR006139InterPro:IPR006140InterPro:IPR006236
InterPro:IPR015878InterPro:IPR016040InterPro:IPR029009InterPro:IPR029752InterPro:IPR029753KEGG:00260+1.1.1.95KEGG:00270+3.3.1.1
KEGG:00680+1.1.1.95KEGG:ath:AT4G34200KO:K00058OMA:MIEPISSPaxDb:O49485Pfam:O49485Pfam:PF00389
Pfam:PF01842Pfam:PF02826Pfscan:PS51671PhylomeDB:O49485PIR:T05416PRIDE:O49485PRO:PR:O49485
ProMEX:O49485PROSITE:PS00065PROSITE:PS00670PROSITE:PS00671PROSITE:PS51671ProteinModelPortal:O49485Proteomes:UP000006548
Reactome:R-ATH-977347RefSeq:NP_195146.1scanprosite:PS00065scanprosite:PS00670scanprosite:PS00671SMART:SM00997SMR:O49485
STRING:3702.AT4G34200.1SUPFAM:SSF143548SUPFAM:SSF51735SUPFAM:SSF52283SUPFAM:SSF55021SwissPalm:O49485TAIR:AT4G34200
tair10-symbols:EDA9TIGRfam:TIGR01327TIGRFAMs:TIGR01327UniGene:At.21335UniGene:At.74573UniPathway:UPA00135unipathway:UPA00314
UniProt:O49485
Coordinates (TAIR10) chr4:-:16374041..16376561
Molecular Weight (calculated) 63328.70 Da
IEP (calculated) 6.53
GRAVY (calculated) 0.16
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)