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AT4G34150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.942
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: soybean gene regulated by cold-2 (TAIR:AT1G09070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INTDeggNOG:ENOG410Y1GTEMBL:AF412098EMBL:BT000766
EMBL:BT014883EMBL:CP002687EnsemblPlants:AT4G34150EnsemblPlants:AT4G34150.1
entrez:829563Gene3D:2.60.40.150GeneID:829563GO:GO:0005829
GO:GO:0009409GO:GO:0009506Gramene:AT4G34150.1hmmpanther:PTHR10024
HOGENOM:HOG000029763IntAct:Q945K9InterPro:IPR000008InterPro:IPR021934
KEGG:ath:AT4G34150OMA:YPPHSAYPfam:PF00168Pfscan:PS50004
Pfscan:PS51516PhylomeDB:Q945K9PROSITE:PS50004PROSITE:PS51516
Proteomes:UP000006548RefSeq:NP_567956.1SMART:SM00239SMR:Q945K9
STRING:3702.AT4G34150.1SUPFAM:SSF49562TAIR:AT4G34150UniGene:At.20546
UniProt:Q945K9
Coordinates (TAIR10) chr4:+:16355035..16356955
Molecular Weight (calculated) 27053.60 Da
IEP (calculated) 7.48
GRAVY (calculated) -0.64
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)