AT4G34140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : D111/G-patch domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.2); Has 620 Blast hits to 588 proteins in 118 species: Archae - 0; Bacteria - 3; Metazoa - 423; Fungi - 53; Plants - 98; Viruses - 3; Other Eukaryotes - 40 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16350942..16354022 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59669.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.63 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.03 | ||||||||||||||||||||||||||||
| Length | 530 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPDDDKELQE PKEEDSYVWD SDTQLYIHHS SGFYHDPNAG WYYCSKDGRY YKHENGEYVP LEYDESSVNP PGDIVTYEPS EDDLGRKCAF SQAENVENGC 101: EVSLSNPGET PSESTGCPND QEPEHRQRPS SWVEDTLIEL YLDGYNQHPS ASSYERASGE NNQDCQMLSA NGDDDAEELE EGEWIPEEDF DPQEENFGEA 201: APSSEEERWL AQYGQVIESP GKTLPEIPSV DLWDWKLVCE TREADNEQVA RLVGRLVRQS ANLHPSVVSG GTLLKTAPIC EARLHLVRVR TGQVYKLRNP 301: SAKYLASLSV YDASNPTKDW EFPDISTEWQ NPDTKRKAKK GKPKRASKLT VKPSEVDMIE EKTKRKAKKV KPKADCKLTV KPCEVDMFEE QETKREAKKV 401: KPKTDCKLTV KPRDEVNMIE EQRSCSYRDR AAERRNLHGG YGVGPGQKGT TVDHNTDEHS VPDTGSEEDT VAEALELSFG SGSYARRIMG NMGWKEGETL 501: GKNTKGLVEP IQAVGNTGNV GLGFPQRRRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)