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AT4G34100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.595
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G32670.1); Has 2169 Blast hits to 1906 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 966; Fungi - 273; Plants - 550; Viruses - 44; Other Eukaryotes - 336 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:COG5183eggNOG:KOG1609EMBL:AK230154EMBL:AL021961EMBL:AL161584EMBL:CP002687
EnsemblPlants:AT4G34100EnsemblPlants:AT4G34100.1entrez:829556ExpressionAtlas:F4JKK0Gene3D:3.30.40.10GeneID:829556Genevisible:F4JKK0
GO:GO:0004842GO:GO:0008270GO:GO:0008299GO:GO:0009414GO:GO:0010025GO:GO:0010143GO:GO:0010345
GO:GO:0016021GO:GO:0016874GO:GO:0042335GO:GO:1900490hmmpanther:PTHR13145HOGENOM:HOG000006013InParanoid:F4JKK0
IntAct:F4JKK0InterPro:IPR011016InterPro:IPR013083KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT4G34100
KO:K10661ncoils:CoilOMA:DNLLADCPaxDb:F4JKK0Pfam:F4JKK0Pfam:PF12906Pfscan:PS51292
PIR:T05426PRIDE:F4JKK0PRO:PR:F4JKK0PROSITE:PS51292ProteinModelPortal:F4JKK0Proteomes:UP000006548RefSeq:NP_001119113.1
RefSeq:NP_195136.3SMART:SM00744SMR:F4JKK0STRING:3702.AT4G34100.1SUPFAM:SSF57850SwissPalm:F4JKK0TAIR:AT4G34100
TMHMM:TMhelixUniGene:At.28193UniPathway:UPA00143UniProt:F4JKK0
Coordinates (TAIR10) chr4:+:16330590..16334864
Molecular Weight (calculated) 123011.00 Da
IEP (calculated) 6.36
GRAVY (calculated) 0.31
Length 1108 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSDRY NFVVRIILLL
0801: LVAWVTLLLF NSALIVVPVS LGRALFSAIP ILPITHGIKC NDLYAFVIGT YAFWTTISGA RYAIEHVKSK RTSVLLNQIW KWCGIVFKSS VLLAIWVFII
0901: PVLIGLLFEL LVIVPMRVPV DESPVFLLYQ DWALGLIFLK IWTRLVMLDH MLPIVDDSWR AKFERVREDG FSRLQGLWVL REIVFPIVMK LLTALCVPYV
1001: LARGVFPMLG YPLVVNSAVY RFAWIGCLSV SLFCFCAKRC HVWFRNLHNS IRDDRYLIGR RLHNFGEAAL ANQNQNQSSE DAGDGVLIGR EGDVDNGLRL
1101: RRAIQQEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)