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AT4G34090.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At4g34090-GFP
(full-length)		plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:829555EMBL:AF370544EMBL:AK229149EMBL:AY081498
EMBL:CP002687EnsemblPlants:AT4G34090EnsemblPlants:AT4G34090.1entrez:829555
ExpressionAtlas:Q94JY0GeneID:829555Gramene:AT4G34090.1hmmpanther:PTHR35115
hmmpanther:PTHR35115:SF1HOGENOM:HOG000030695PhylomeDB:Q94JY0Proteomes:UP000006548
RefSeq:NP_567951.1TAIR:AT4G34090UniGene:At.19075UniGene:At.45834
UniProt:Q94JY0
Coordinates (TAIR10) chr4:-:16328051..16330110
Molecular Weight (calculated) 36911.20 Da
IEP (calculated) 5.90
GRAVY (calculated) -0.14
Length 330 amino acids
Sequence (TAIR10)
(BLAST) 		001: MGSISMHITP STALPIRHFR ARVSCCSSGH VSFIKDVAAT EPPMHLHHLL KVLQTRGETI ISPGAKQGLI PLAIPLSKNS SGSVTALLRW PTAPPGMDMP
101: VVEVWRSGVR LIARNVDEYI HRILVEEDAQ ELTELYRASG EAGEKLYEKG AFAESEIDNL DVYVLKKVGL FPDLLERKVL RHFDEGDHVS AMVTGEFYTK
201: KDLFPGFGRP FVYYANILQK VGRNVEAKDA ARVALRSPWW TLGCPYEEVA SIAQWEDEQI EFIREKVSDE GRFEDLHKGK APIQVALDVA AFLLDLASIE
301: GTWSESLNHI AKCYEEAGLH HISNFVLYTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)