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AT4G34000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : abscisic acid responsive elements-binding factor 3
Curator
Summary (TAIR10)
Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.
Computational
Description (TAIR10)
abscisic acid responsive elements-binding factor 3 (ABF3); FUNCTIONS IN: protein binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABRE binding factor 4 (TAIR:AT3G19290.1); Has 2159 Blast hits to 2007 proteins in 161 species: Archae - 0; Bacteria - 4; Metazoa - 512; Fungi - 34; Plants - 1491; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Protein Annotations
BioGrid:14829eggNOG:ENOG410IFYJeggNOG:ENOG410YB2MEMBL:AF093546EMBL:AF334210EMBL:AK175851EMBL:AL021961
EMBL:AL031032EMBL:AL161584EMBL:AY054605EMBL:AY081467EMBL:CP002687EnsemblPlants:AT4G34000EnsemblPlants:AT4G34000.1
EnsemblPlants:AT4G34000.2entrez:829547GeneID:829547Genevisible:Q9M7Q3GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009414GO:GO:0009651GO:GO:0009737GO:GO:0009738GO:GO:0043565hmmpanther:PTHR22952hmmpanther:PTHR22952:SF158
HOGENOM:HOG000237278InParanoid:Q9M7Q3IntAct:Q9M7Q3InterPro:IPR004827iPTMnet:Q9M7Q3KEGG:ath:AT4G34000KO:K14432
ncoils:CoilOMA:KQTTIAFPaxDb:Q9M7Q3Pfam:PF00170Pfam:Q9M7Q3Pfscan:PS50217PhylomeDB:Q9M7Q3
PIR:T05228PIR:T05229PRIDE:Q9M7Q3PRO:PR:Q9M7Q3PROSITE:PS00036PROSITE:PS50217ProteinModelPortal:Q9M7Q3
Proteomes:UP000006548RefSeq:NP_001031785.2RefSeq:NP_567949.1RefSeq:NP_849490.2scanprosite:PS00036SMART:SM00338SMR:Q9M7Q3
STRING:3702.AT4G34000.1SUPFAM:SSF57959TAIR:AT4G34000tair10-symbols:ABF3tair10-symbols:DPBF5UniGene:At.21769UniProt:Q9M7Q3
Coordinates (TAIR10) chr4:+:16296008..16297971
Molecular Weight (calculated) 49680.10 Da
IEP (calculated) 8.80
GRAVY (calculated) -0.54
Length 454 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSRLNFKSF VDGVSEQQPT VGTSLPLTRQ NSVFSLTFDE FQNSWGGGIG KDFGSMNMDE LLKNIWTAEE SHSMMGNNTS YTNISNGNSG NTVINGGGNN
101: IGGLAVGVGG ESGGFFTGGS LQRQGSLTLP RTISQKRVDD VWKELMKEDD IGNGVVNGGT SGIPQRQQTL GEMTLEEFLV RAGVVREEPQ PVESVTNFNG
201: GFYGFGSNGG LGTASNGFVA NQPQDLSGNG VAVRQDLLTA QTQPLQMQQP QMVQQPQMVQ QPQQLIQTQE RPFPKQTTIA FSNTVDVVNR SQPATQCQEV
301: KPSILGIHNH PMNNNLLQAV DFKTGVTVAA VSPGSQMSPD LTPKSALDAS LSPVPYMFGR VRKTGAVLEK VIERRQKRMI KNRESAARSR ARKQAYTMEL
401: EAEIAQLKEL NEELQKKQVE IMEKQKNQLL EPLRQPWGMG CKRQCLRRTL TGPW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)