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AT4G33980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JJC8eggNOG:ENOG4111AITEMBL:AY088585EMBL:BT024609EMBL:CP002687EnsemblPlants:AT4G33980EnsemblPlants:AT4G33980.1
entrez:829544ExpressionAtlas:Q8L983GeneID:829544Gramene:AT4G33980.1hmmpanther:PTHR33676hmmpanther:PTHR33676:SF3HOGENOM:HOG000148645
PhylomeDB:Q8L983Proteomes:UP000006548RefSeq:NP_567946.1STRING:3702.AT4G33980.2TAIR:AT4G33980UniGene:At.25515UniProt:Q8L983
Coordinates (TAIR10) chr4:-:16283047..16284946
Molecular Weight (calculated) 24606.80 Da
IEP (calculated) 4.70
GRAVY (calculated) -1.12
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MENDCTVNIV SLEKDRDVSE ASAESQSEST LSNSLDSGVT AETSRSDADS KLDECTAWTN EKHNSYLDYL ESSFVRQLYS LLGGGTQRLS RTRDVQSNSH
101: KSADQFTVLQ NGCWQKVNFG KKQSCLETSS EFRFHRNSLR NKPENSNGNY TMGTTVQGDV LCHDETKHSE ASGQNFREEE EEEEKGEVSK KREREANNDD
201: SSLKEDQVVP VRMVKPRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)