AT4G33970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15880.1); Has 345457 Blast hits to 110650 proteins in 3295 species: Archae - 766; Bacteria - 68103; Metazoa - 108699; Fungi - 41264; Plants - 80873; Viruses - 7608; Other Eukaryotes - 38144 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16279795..16281894 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75251.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.88 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||
| Length | 699 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPFYKQPWVF SKVFVLAMAK PPSFGCCFFL LFFSFLSSSF VSFALTDTEA AFIVQRQLLT LPDNGELPDD IEYEVDLKAT FANTRLKRAY IALQAWKKAI 101: FSDPFNTTGN WHGPHVCGYT GVVCAPALDD SDVTVVAGVD LNGADIAGHL PAELGLMTDV AMFHLNSNRF CGIIPKSFEK LKLMHEFDVS NNRFVGPFPN 201: VVLSWPDVKY FDLRFNDFEG QVPPELFKKE LDAIFLNDNR FTSVIPESLG ESPASVVTFA NNKFTGCIPK SIGNMKNLNE IVFMDNDLGG CFPSEIGKLS 301: NVTVFDASKN SFIGRLPTSF VGLTSVEEID ISGNKLTGLV PHNICQLPNL VNLTYSYNYF SGQGGSCVPG GSRKEIALDD TRNCLASRPE QRSAQECAVV 401: INRPVDCSKD KCAGGSSTPS KPSPVHKPTP VPTTPVHKPT PVPTTPVQKP SPVPTTPVQK PSPVPTTPVH EPSPVLATPV DKPSPVPSRP VQKPQPPKES 501: PQPDDPYDQS PVTKRRSPPP APVNSPPPPV YSPPPPPPPV HSPPPPVHSP PPPPVYSPPP PPPPVHSPPP PVFSPPPPVY SPPPPVHSPP PPVHSPPPPA 601: PVHSPPPPVH SPPPPPPVYS PPPPVFSPPP SQSPPVVYSP PPRPPKINSP PVQSPPPAPV EKKETPPAHA PAPSDDEFII PPFIGHQYAS PPPPMFAGY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)