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AT4G33970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15880.1); Has 345457 Blast hits to 110650 proteins in 3295 species: Archae - 766; Bacteria - 68103; Metazoa - 108699; Fungi - 41264; Plants - 80873; Viruses - 7608; Other Eukaryotes - 38144 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDZHeggNOG:ENOG410Y973EMBL:AL031032EMBL:AL161584EMBL:CP002687EMBL:DQ446892EnsemblPlants:AT4G33970
EnsemblPlants:AT4G33970.1entrez:829543Gene3D:3.80.10.10GeneID:829543Genevisible:O81765GO:GO:0005199GO:GO:0005576
GO:GO:0005618GO:GO:0071555hmmpanther:PTHR32093hmmpanther:PTHR32093:SF23HOGENOM:HOG000215509InParanoid:O81765InterPro:IPR032675
KEGG:ath:AT4G33970OMA:PTTPVHKPaxDb:O81765Pfam:O81765PhylomeDB:O81765PIR:T05225PRIDE:O81765
PRO:PR:O81765ProteinModelPortal:O81765Proteomes:UP000006548RefSeq:NP_195123.1SMR:O81765SUPFAM:SSF52058TAIR:AT4G33970
TCDB:3.A.20.1.2TMHMM:TMhelixUniGene:At.65451UniProt:O81765
Coordinates (TAIR10) chr4:-:16279795..16281894
Molecular Weight (calculated) 75251.80 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.33
Length 699 amino acids
Sequence (TAIR10)
(BLAST)
001: MPFYKQPWVF SKVFVLAMAK PPSFGCCFFL LFFSFLSSSF VSFALTDTEA AFIVQRQLLT LPDNGELPDD IEYEVDLKAT FANTRLKRAY IALQAWKKAI
101: FSDPFNTTGN WHGPHVCGYT GVVCAPALDD SDVTVVAGVD LNGADIAGHL PAELGLMTDV AMFHLNSNRF CGIIPKSFEK LKLMHEFDVS NNRFVGPFPN
201: VVLSWPDVKY FDLRFNDFEG QVPPELFKKE LDAIFLNDNR FTSVIPESLG ESPASVVTFA NNKFTGCIPK SIGNMKNLNE IVFMDNDLGG CFPSEIGKLS
301: NVTVFDASKN SFIGRLPTSF VGLTSVEEID ISGNKLTGLV PHNICQLPNL VNLTYSYNYF SGQGGSCVPG GSRKEIALDD TRNCLASRPE QRSAQECAVV
401: INRPVDCSKD KCAGGSSTPS KPSPVHKPTP VPTTPVHKPT PVPTTPVQKP SPVPTTPVQK PSPVPTTPVH EPSPVLATPV DKPSPVPSRP VQKPQPPKES
501: PQPDDPYDQS PVTKRRSPPP APVNSPPPPV YSPPPPPPPV HSPPPPVHSP PPPPVYSPPP PPPPVHSPPP PVFSPPPPVY SPPPPVHSPP PPVHSPPPPA
601: PVHSPPPPVH SPPPPPPVYS PPPPVFSPPP SQSPPVVYSP PPRPPKINSP PVQSPPPAPV EKKETPPAHA PAPSDDEFII PPFIGHQYAS PPPPMFAGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)