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AT4G33900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G23580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AL031032EMBL:AL161584EMBL:CP002687EMBL:DQ446891EnsemblPlants:AT4G33900
EnsemblPlants:AT4G33900.1entrez:829533Gene3D:2.130.10.80GeneID:829533Genevisible:Q1PE27Gramene:AT4G33900.1hmmpanther:PTHR24414
hmmpanther:PTHR24414:SF23InParanoid:Q1PE27InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916KEGG:ath:AT4G33900OMA:MARESHS
PaxDb:Q1PE27Pfam:PF00646Pfam:PF01344Pfam:Q1PE27Pfscan:PS50181PhylomeDB:Q1PE27PIR:T05218
PRIDE:Q1PE27PRO:PR:Q1PE27PROSITE:PS50181ProteinModelPortal:Q1PE27Proteomes:UP000006548RefSeq:NP_567939.1SMART:SM00256
SMART:SM00612SUPFAM:0052715SUPFAM:SSF81383TAIR:AT4G33900UniGene:At.64716UniProt:Q1PE27
Coordinates (TAIR10) chr4:-:16251572..16252711
Molecular Weight (calculated) 43188.60 Da
IEP (calculated) 7.41
GRAVY (calculated) -0.21
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MEYGEEPSIK RFLMLPDDLV FNCLARVSRL HYPTLSLVSK KFRFLLASKE LYQTRILLGG TESCLYVCVR LHTDSEQLHW FIIYQGPNSS KKVLVPISSP
101: NFTSAALPGF VVVGHEIYAI GGGSENKNAS INATGSKTYN ALSSVMVMDS RSHTWREAPS MRVARVFPSA CTLDGRIYVT GGCENLNSMN WMEIFDTKTQ
201: TWEFLQIPSE EVCKGSEYLS ISYQRTVYVG SREKDVTYKM HKGKWRGADI CLNHGWSLDP SSCCVIENVF YRCSLGDVRW YDLKKREWAA LKGLEGLPTF
301: TNYYRNFKSA DHCGKLAISW EEYVLVDDET KIWCAEIAIQ KRQNGEIWGT LEWFDNVFIS SGPNRHVDLL VNALTATVW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)