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AT4G33890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.963
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 133 Blast hits to 131 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 129; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKJ9eggNOG:ENOG410YAE8EMBL:AL031032EMBL:AL161584EMBL:AY093067EMBL:BT008733EMBL:CP002687
EnsemblPlants:AT4G33890EnsemblPlants:AT4G33890.1EnsemblPlants:AT4G33890.2entrez:829532GeneID:829532GO:GO:0070461Gramene:AT4G33890.1
Gramene:AT4G33890.2hmmpanther:PTHR21277hmmpanther:PTHR21277:SF12HOGENOM:HOG000240434InterPro:IPR024738KEGG:ath:AT4G33890OMA:VSCYDSG
Pfam:PF12767PhylomeDB:O81757PIR:T05217Proteomes:UP000006548RefSeq:NP_195115.1RefSeq:NP_974677.1TAIR:AT4G33890
UniGene:At.27577UniProt:O81757
Coordinates (TAIR10) chr4:+:16250057..16251085
Molecular Weight (calculated) 38259.90 Da
IEP (calculated) 10.15
GRAVY (calculated) -0.57
Length 342 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSNQGSSRL DTLEIKALIY REIGNQRAES YFNQLGRFFA LKITKSEFDK LCIKTIGRQN IHLHNRLIRS IIKNACIAKS PPFIKKGGSF VRFGNGDSKK
101: NSQIQPLHGD SAFSPSTRKC RSRKLRDRPS PLGPLGKPHS LTTTNEESMS KAQSATELLS LGSRPPVEVV SVEEGEEVEQ IAGGSPSVQS RCPLTAPLGV
201: SMSLRNGATR KSVSNVSMCS RSFNRETCQN NGELPDTRTL RSRLERRLEM EGLKITMDSV SLLNSGLDVF MRRLIEPCLS LANTRCGTDR VREMNYQYTQ
301: QSRRLSYVSM SDFRAGMELN TEILGEDWPM HMEKICSRAS DK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)