suba logo
AT4G33840.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Glycosyl hydrolase family 10 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 10 protein (TAIR:AT4G33830.1); Has 2042 Blast hits to 2029 proteins in 439 species: Archae - 10; Bacteria - 1163; Metazoa - 20; Fungi - 357; Plants - 275; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G33840-MONOMERCAZy:CBM22CAZy:GH10eggNOG:COG3693eggNOG:ENOG410IVD2EMBL:AK227024EMBL:BT010469
EMBL:CP002687EnsemblPlants:AT4G33840EnsemblPlants:AT4G33840.1entrez:829526Gene3D:2.60.120.260Gene3D:3.20.20.80GeneID:829526
GO:GO:0004553GO:GO:0005975Gramene:AT4G33840.1hmmpanther:PTHR31490hmmpanther:PTHR31490:SF2InterPro:IPR001000InterPro:IPR003305
InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT4G33840OMA:SENTMVEPfam:PF00331Pfam:PF02018
Pfscan:PS51760PhylomeDB:Q6NQI6PROSITE:PS51760Proteomes:UP000006548RefSeq:NP_195110.3SMART:SM00633SMR:Q6NQI6
SUPFAM:SSF49785SUPFAM:SSF51445TAIR:AT4G33840UniGene:At.31549unipathway:UPA00114UniProt:Q6NQI6
Coordinates (TAIR10) chr4:-:16223694..16226095
Molecular Weight (calculated) 64881.60 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.41
Length 576 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)