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AT4G33700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CBS domain-containing protein with a domain of unknown function (DUF21)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT2G14520.1); Has 13295 Blast hits to 13266 proteins in 2597 species: Archae - 106; Bacteria - 10306; Metazoa - 262; Fungi - 156; Plants - 233; Viruses - 0; Other Eukaryotes - 2232 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1253eggNOG:KOG2118EMBL:AL031394EMBL:AL161584EMBL:AY064150EMBL:AY101524EMBL:CP002687
EnsemblPlants:AT4G33700EnsemblPlants:AT4G33700.1entrez:829512GeneID:829512Genevisible:Q8VZI2GO:GO:0005886GO:GO:0016021
Gramene:AT4G33700.1hmmpanther:PTHR12064hmmpanther:PTHR12064:SF30HOGENOM:HOG000183089InParanoid:Q8VZI2InterPro:IPR000644InterPro:IPR002550
iPTMnet:Q8VZI2KEGG:ath:AT4G33700KO:K16302OMA:PQERMLRPaxDb:Q8VZI2Pfam:PF01595Pfam:Q8VZI2
Pfscan:PS51371PhylomeDB:Q8VZI2PIR:T04987PRIDE:Q8VZI2PRO:PR:Q8VZI2PROSITE:PS51371ProteinModelPortal:Q8VZI2
Proteomes:UP000006548RefSeq:NP_195096.2SMR:Q8VZI2STRING:3702.AT4G33700.1SUPFAM:SSF54631SwissPalm:Q8VZI2TAIR:AT4G33700
TMHMM:TMhelixUniGene:At.27065UniProt:Q8VZI2
Coordinates (TAIR10) chr4:-:16176547..16179188
Molecular Weight (calculated) 47112.90 Da
IEP (calculated) 5.98
GRAVY (calculated) 0.18
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVEYVCCSP NFFIHIAVIV FLVLFAGLMS GLTLGLMSLS LVDLEVLAKS GTPEHRKYAA KILPVVKNQH LLLVTLLICN AAAMETLPIF LDGLVTAWGA
101: ILISVTLILL FGEIIPQSIC SRYGLAIGAT VAPFVRVLVF ICLPVAWPIS KLLDFLLGHR RAALFRRAEL KTLVDFHGNE AGKGGELTHD ETTIIAGALE
201: LSEKMVKDAM TPISDIFVID INAKLDRDLM NLILEKGHSR VPVYYEQPTN IIGLVLVKNL LTINPDEEIP VKNVTIRRIP RVPEILPLYD ILNEFQKGLS
301: HMAVVVRQCD KIHPLPSKNG SVKEARVDVD SEGTPTPQER MLRTKRSLQK WKSFPNRASS FKGGSKSKKW SKDNDADILQ LNGNPLPKLA EEEEAVGIIT
401: MEDVIEELLQ EEIFDETDHH FEDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)