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AT4G33680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Curator
Summary (TAIR10)
Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.
Computational
Description (TAIR10)
ABERRANT GROWTH AND DEATH 2 (AGD2); FUNCTIONS IN: transaminase activity, copper ion binding, L,L-diaminopimelate aminotransferase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: LL-diaminopimelate aminotransferase, plant-related (InterPro:IPR019942), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: AGD2-like defense response protein 1 (TAIR:AT2G13810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G33680-MONOMERBioCyc:MetaCyc:AT4G33680-MONOMERBioGrid:14792BRENDA:2.6.1.83EC:2.6.1.83eggNOG:COG0436eggNOG:KOG0257
EMBL:AL031394EMBL:AL161584EMBL:AY056423EMBL:AY065256EMBL:AY117246EMBL:AY518701EMBL:CP002687
EnsemblPlants:AT4G33680EnsemblPlants:AT4G33680.1entrez:829510EvolutionaryTrace:Q93ZN9Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:829510
Genevisible:Q93ZN9GO:GO:0005507GO:GO:0008483GO:GO:0009089GO:GO:0009507GO:GO:0009570GO:GO:0009735
GO:GO:0009862GO:GO:0010285GO:GO:0030170Gramene:AT4G33680.1gramene_pathway:2.6.1.83gramene_pathway:PWY-5097gramene_plant_reactome:1119419
gramene_plant_reactome:6877401HAMAP:MF_01642hmmpanther:PTHR11751hmmpanther:PTHR11751:SF376HOGENOM:HOG000223061InParanoid:Q93ZN9InterPro:IPR004839
InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424InterPro:IPR019942KEGG:00300+2.6.1.83KEGG:ath:AT4G33680KO:K10206
OMA:RCAFTVVPANTHER:PTHR11751:SF376PaxDb:Q93ZN9PDB:2Z1ZPDB:2Z20PDB:3EI5PDB:3EI6
PDB:3EI7PDB:3EI8PDB:3EI9PDB:3EIAPDB:3EIBPDBsum:2Z1ZPDBsum:2Z20
PDBsum:3EI5PDBsum:3EI6PDBsum:3EI7PDBsum:3EI8PDBsum:3EI9PDBsum:3EIAPDBsum:3EIB
Pfam:PF00155Pfam:Q93ZN9PhylomeDB:Q93ZN9PIR:T04985PRIDE:Q93ZN9PRO:PR:Q93ZN9ProteinModelPortal:Q93ZN9
Proteomes:UP000006548RefSeq:NP_567934.1SABIO-RK:Q93ZN9SMR:Q93ZN9STRING:3702.AT4G33680.1SUPFAM:SSF53383TAIR:AT4G33680
tair10-symbols:AGD2TIGRfam:TIGR03542TIGRFAMs:TIGR03542UniGene:At.2456UniPathway:UPA00034UniProt:Q93ZN9
Coordinates (TAIR10) chr4:-:16171847..16174630
Molecular Weight (calculated) 50398.90 Da
IEP (calculated) 7.39
GRAVY (calculated) -0.16
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTHQLVSS MISSSSSTFL APSNFNLRTR NACLPMAKRV NTCKCVATPQ EKIEYKTKVS RNSNMSKLQA GYLFPEIARR RSAHLLKYPD AQVISLGIGD
101: TTEPIPEVIT SAMAKKAHEL STIEGYSGYG AEQGAKPLRA AIAKTFYGGL GIGDDDVFVS DGAKCDISRL QVMFGSNVTI AVQDPSYPAY VDSSVIMGQT
201: GQFNTDVQKY GNIEYMRCTP ENGFFPDLST VGRTDIIFFC SPNNPTGAAA TREQLTQLVE FAKKNGSIIV YDSAYAMYMS DDNPRSIFEI PGAEEVAMET
301: ASFSKYAGFT GVRLGWTVIP KKLLYSDGFP VAKDFNRIIC TCFNGASNIS QAGALACLTP EGLEAMHKVI GFYKENTNII IDTFTSLGYD VYGGKNAPYV
401: WVHFPNQSSW DVFAEILEKT HVVTTPGSGF GPGGEGFVRV SAFGHRENIL EACRRFKQLY K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)