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AT4G33440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G62110.1); Has 4317 Blast hits to 4300 proteins in 507 species: Archae - 6; Bacteria - 1547; Metazoa - 14; Fungi - 1180; Plants - 1416; Viruses - 2; Other Eukaryotes - 152 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G33440-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410IIV5
EMBL:BT002785EMBL:BT004354EMBL:CP002687EnsemblPlants:AT4G33440
EnsemblPlants:AT4G33440.1entrez:829481Gene3D:2.160.20.10GeneID:829481
GO:GO:0004650GO:GO:0005576GO:GO:0005975GO:GO:0016021
GO:GO:0016829GO:GO:0071555Gramene:AT4G33440.1hmmpanther:PTHR31339
hmmpanther:PTHR31339:SF4HOGENOM:HOG000238076InterPro:IPR000743InterPro:IPR006626
InterPro:IPR011050InterPro:IPR012334KEGG:ath:AT4G33440OMA:TEKWKCK
Pfam:PF00295PhylomeDB:Q84K13Proteomes:UP000006548RefSeq:NP_195070.2
SMART:SM00710SMR:Q84K13STRING:3702.AT4G33440.1SUPFAM:SSF51126
TAIR:AT4G33440TMHMM:TMhelixUniGene:At.43591UniProt:Q84K13
Coordinates (TAIR10) chr4:+:16092020..16094732
Molecular Weight (calculated) 52203.40 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.11
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)