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AT4G33420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G51890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G33420-MONOMEREC:1.11.1.7eggNOG:ENOG410IEP3eggNOG:ENOG410XUVZEMBL:AF451951EMBL:AL035678EMBL:AL161583
EMBL:BT044614EMBL:CP002687EnsemblPlants:AT4G33420EnsemblPlants:AT4G33420.1entrez:829479GeneID:829479Genevisible:Q9SZB9
GO:GO:0004601GO:GO:0005576GO:GO:0006979GO:GO:0020037GO:GO:0046872Gramene:AT4G33420.1hmmpanther:PTHR31235
hmmpanther:PTHR31235:SF22InParanoid:Q9SZB9InterPro:IPR000823InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794
KEGG:00940+1.11.1.7KEGG:ath:AT4G33420KO:K00430OMA:NQAKFFFPaxDb:Q9SZB9PeroxiBase:213Pfam:PF00141
Pfam:Q9SZB9Pfscan:PS50873PIR:T05993PRIDE:Q9SZB9PRINTS:PR00458PRINTS:PR00461PRO:PR:Q9SZB9
PROSITE:PS00435PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:Q9SZB9Proteomes:UP000006548RefSeq:NP_567919.1scanprosite:PS00435
scanprosite:PS00436SMR:Q9SZB9STRING:3702.AT4G33420.1SUPFAM:SSF48113TAIR:AT4G33420TMHMM:TMhelixUniGene:At.28650
UniProt:Q9SZB9
Coordinates (TAIR10) chr4:+:16084856..16086105
Molecular Weight (calculated) 35976.90 Da
IEP (calculated) 8.39
GRAVY (calculated) -0.24
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTRFKKQNN KMVRANIVSM VLLMHAIVGF PFHARGLSMT YYMMSCPFAE QIVKNSVNNA LQADPTLAAG LIRMLFHDCF IEGCDASILL DSTKDNTAEK
101: DSPANLSLRG YEIIDDAKEK IENRCPGVVS CADIVAMAAR DAVFWAGGPY YDIPKGRFDG KRSKIEDTRN LPSPFLNASQ LIQTFGQRGF TPQDVVALSG
201: AHTLGVARCS SFKARLTVPD SSLDSTFANT LSKTCSAGDN AEQPFDATRN DFDNAYFNAL QMKSGVLFSD QTLFNTPRTR NLVNGYALNQ AKFFFDFQQA
301: MRKMSNLDVK LGSQGEVRQN CRSIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)