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AT4G33350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22923678 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:16618929 (2006): unclear
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tic22-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tic22-like family protein; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloroplast protein import component Tic22 (InterPro:IPR005692), Tic22-like (InterPro:IPR007378); BEST Arabidopsis thaliana protein match is: Tic22-like family protein (TAIR:AT3G23710.1); Has 113 Blast hits to 113 proteins in 40 species: Archae - 0; Bacteria - 48; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:14755eggNOG:ENOG410IG4UeggNOG:ENOG4111JF1EMBL:AK118805EMBL:AL035678EMBL:AL161583EMBL:BT005417
EMBL:CP002687EnsemblPlants:AT4G33350EnsemblPlants:AT4G33350.1entrez:829471GeneID:829471Genevisible:Q9SZB2GO:GO:0009507
GO:GO:0009536GO:GO:0009941GO:GO:0015031GO:GO:0016020GO:GO:0031972hmmpanther:PTHR33926hmmpanther:PTHR33926:SF2
HOGENOM:HOG000242260InParanoid:Q9SZB2IntAct:Q9SZB2InterPro:IPR005692InterPro:IPR007378KEGG:ath:AT4G33350OMA:THVRMRQ
PaxDb:Q9SZB2Pfam:PF04278Pfam:Q9SZB2PhylomeDB:Q9SZB2PIR:T05986PRIDE:Q9SZB2PRO:PR:Q9SZB2
ProteinModelPortal:Q9SZB2Proteomes:UP000006548RefSeq:NP_001190901.1RefSeq:NP_195061.1STRING:3702.AT4G33350.1TAIR:AT4G33350TIGRfam:TIGR00995
TIGRFAMs:TIGR00995UniGene:At.31588UniProt:Q9SZB2
Coordinates (TAIR10) chr4:-:16064638..16066715
Molecular Weight (calculated) 30107.10 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.36
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)