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AT4G33330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.905
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant glycogenin-like starch initiation protein 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plant glycogenin-like starch initiation protein 3 (PGSIP3); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, sperm cell, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 1 (TAIR:AT3G18660.1); Has 1395 Blast hits to 1389 proteins in 315 species: Archae - 0; Bacteria - 155; Metazoa - 259; Fungi - 303; Plants - 506; Viruses - 75; Other Eukaryotes - 97 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:COG5597eggNOG:KOG1950EMBL:KJ138725EnsemblPlants:AT4G33330EnsemblPlants:AT4G33330.1entrez:829469
ExpressionAtlas:W8Q2X3Gene3D:3.90.550.10GeneID:829469GO:GO:0005794GO:GO:0009834GO:GO:0015020GO:GO:0045492
Gramene:AT4G33330.1gramene_plant_reactome:5654909gramene_plant_reactome:6877705hmmpanther:PTHR11183hmmpanther:PTHR11183:SF44InterPro:IPR002495InterPro:IPR029044
InterPro:IPR030519KEGG:00051+2.4.1.-KEGG:00512+2.4.1.-KEGG:00513+2.4.1.-KEGG:00514+2.4.1.-KEGG:00522+2.4.1.-KEGG:00533+2.4.1.-
KEGG:00540+2.4.1.-KEGG:00550+2.4.1.-KEGG:00561+2.4.1.-KEGG:00563+2.4.1.-KEGG:00600+2.4.1.-KEGG:00601+2.4.1.-KEGG:00603+2.4.1.-
KEGG:00604+2.4.1.-KEGG:00906+2.4.1.-KEGG:00908+2.4.1.-KEGG:00941+2.4.1.-KEGG:00942+2.4.1.-KEGG:00944+2.4.1.-KEGG:00945+2.4.1.-
KEGG:00965+2.4.1.-PANTHER:PTHR11183:SF44PaxDb:W8Q2X3Pfam:PF01501Pfam:Q8GWW4PhylomeDB:W8Q2X3ProteinModelPortal:W8Q2X3
RefSeq:NP_195059.3SMR:W8Q2X3STRING:3702.AT4G33330.2SUPFAM:SSF53448tair10-symbols:GUX2tair10-symbols:PGSIP3TMHMM:TMhelix
UniGene:At.48931UniProt:Q8GWW4UniProt:W8Q2X3
Coordinates (TAIR10) chr4:-:16060142..16063061
Molecular Weight (calculated) 70062.40 Da
IEP (calculated) 8.64
GRAVY (calculated) -0.37
Length 596 amino acids
Sequence (TAIR10)
(BLAST)
001: MTIMTMIMKM APSKSALIRF NLVLLGFSFL LYTAIFFHPS SSVYFSSGAS FVGCSFRDCT PKVVRGVKMQ ELVEENEINK KDLLTASNQT KLEAPSFMEE
101: ILTRGLGKTK IGMVNMEECD LTNWKRYGET VHIHFERVSK LFKWQDLFPE WIDEEEETEV PTCPEIPMPD FESLEKLDLV VVKLPCNYPE EGWRREVLRL
201: QVNLVAANLA AKKGKTDWRW KSKVLFWSKC QPMIEIFRCD DLEKREADWW LYRPEVVRLQ QRLSLPVGSC NLALPLWAPQ GVDKVYDLTK IEAETKRPKR
301: EAYVTVLHSS ESYVCGAITL AQSLLQTNTK RDLILLHDDS ISITKLRALA AAGWKLRRII RIRNPLAEKD SYNEYNYSKF RLWQLTDYDK VIFIDADIIV
401: LRNLDLLFHF PQMSATGNDV WIYNSGIMVI EPSNCTFTTI MSQRSEIVSY NGGDQGYLNE IFVWWHRLPR RVNFLKNFWS NTTKERNIKN NLFAAEPPQV
501: YAVHYLGWKP WLCYRDYDCN YDVDEQLVYA SDAAHVRWWK VHDSMDDALQ KFCRLTKKRR TEINWERRKA RLRGSTDYHW KINVTDPRRR RSYLIG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)