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AT4G33280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G18990.1); Has 674 Blast hits to 576 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 674; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J25BeggNOG:ENOG410YSHEEMBL:AJ441117EMBL:AL035678
EMBL:AL161583EMBL:CP002687EnsemblPlants:AT4G33280EnsemblPlants:AT4G33280.1
entrez:829464Gene3D:2.40.330.10GeneID:829464Genevisible:Q8RYD1
GO:GO:0003677GO:GO:0005634GO:GO:0005773GO:GO:0006351
GO:GO:0006355Gramene:AT4G33280.1hmmpanther:PTHR31391hmmpanther:PTHR31391:SF17
HOGENOM:HOG000154089InParanoid:Q8RYD1InterPro:IPR003340InterPro:IPR015300
KEGG:ath:AT4G33280OMA:MEENCEDPaxDb:Q8RYD1Pfam:PF02362
Pfam:Q8RYD1Pfscan:PS50863PhylomeDB:Q8RYD1PIR:T05979
PRO:PR:Q8RYD1PROSITE:PS50863ProteinModelPortal:Q8RYD1Proteomes:UP000006548
RefSeq:NP_195054.2SMART:SM01019SMR:Q8RYD1STRING:3702.AT4G33280.1
SUPFAM:SSF101936TAIR:AT4G33280UniGene:At.31598UniProt:Q8RYD1
Coordinates (TAIR10) chr4:-:16047357..16049310
Molecular Weight (calculated) 38762.20 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.49
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MEENCEDCMK WEEELYWTHF QTLHFTQLLL PGFHNRLVIP RKFSTHCKRK LPQIVTLKSP SGVTYNVGVE EDDEKTMAFR FGWDKFVKDH SLEENDLLVF
101: KFHGVSEFEV LVFDGQTLCE KPTSYFVRKC GHAEKTKASH TGYEQEEHIN SDIDTASAQL PVISPTSTVR VSEGKYPLSG FKKMRRELSN DNLDQKADVE
201: MISAGSNKKA LSLAKRAISP DGFLVFMKRS HVVSKCFLTI PYKWCVKNML ITRQEVVMQV DQTKWEMKFN IFGARGSGGI STGWKKFVQD NNLREGDVCV
301: FEPANSETKP LHLNVYIFRG EETERTNNVD PVYTISE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)