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AT4G33230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: sperm cell, sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G26450.1); Has 2991 Blast hits to 2919 proteins in 346 species: Archae - 6; Bacteria - 631; Metazoa - 8; Fungi - 203; Plants - 2112; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G33230-MONOMERBRENDA:3.1.1.11EC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IN0HEMBL:AL035525EMBL:AL161583
EMBL:CP002687EnsemblPlants:AT4G33230EnsemblPlants:AT4G33230.1entrez:829459Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:829459
Genevisible:Q9SMY6GO:GO:0004857GO:GO:0005618GO:GO:0016021GO:GO:0030599GO:GO:0042545GO:GO:0045330
GO:GO:0045490Gramene:AT4G33230.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31707hmmpanther:PTHR31707:SF3HOGENOM:HOG000217409
InParanoid:Q9SMY6InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131iPTMnet:Q9SMY6
KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT4G33230OMA:RYTIYIKPaxDb:Q9SMY6Pfam:PF01095Pfam:PF04043
Pfam:Q9SMY6PhylomeDB:Q9SMY6PIR:T05203PRIDE:Q9SMY6PRO:PR:Q9SMY6PROSITE:PS00503ProteinModelPortal:Q9SMY6
Proteomes:UP000006548RefSeq:NP_195049.1scanprosite:PS00503SMART:SM00856SMR:Q9SMY6STRING:3702.AT4G33230.1SUPFAM:SSF101148
SUPFAM:SSF51126TAIR:AT4G33230TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelixUniGene:At.54586UniPathway:UPA00545
UniProt:Q9SMY6
Coordinates (TAIR10) chr4:-:16026591..16028754
Molecular Weight (calculated) 67746.00 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.42
Length 609 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFQDFDKIQ ERVNAERKRK FRKRIILGVV SVLVVAAAII GGAFAYVTYE NKTQEQGKTT NNKSKDSPTK SESPSPKPPS SAAQTVKAGQ VDKIIQTLCN
101: STLYKPTCQN TLKNETKKDT PQTDPRSLLK SAIVAVNDDL DQVFKRVLSL KTENKDDKDA IAQCKLLVDE AKEELGTSMK RINDSEVNNF AKIVPDLDSW
201: LSAVMSYQET CVDGFEEGKL KTEIRKNFNS SQVLTSNSLA MIKSLDGYLS SVPKVKTRLL LEARSSAKET DHITSWLSNK ERRMLKAVDV KALKPNATVA
301: KDGSGNFTTI NAALKAMPAK YQGRYTIYIK HGIYDESVII DKKKPNVTMV GDGSQKTIVT GNKSHAKKIR TFLTATFVAQ GEGFMAQSMG FRNTAGPEGH
401: QAVAIRVQSD RSVFLNCRFE GYQDTLYAYT HRQYYRSCVI IGTVDFIFGD AAAIFQNCDI FIRKGLPGQK NTVTAQGRVD KFQTTGFVIH NCTVAPNEDL
501: KPVKAQFKSY LGRPWKPHSR TVVMESTIED VIDPVGWLRW QETDFAIDTL SYAEYKNDGP SGATAARVKW PGFRVLNKEE AMKFTVGPFL QGEWIQAIGS
601: PVKLGLYDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)