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AT4G33220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pectin methylesterase 44
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pectin methylesterase 44 (PME44); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT3G43270.1); Has 2773 Blast hits to 2721 proteins in 324 species: Archae - 6; Bacteria - 597; Metazoa - 1; Fungi - 196; Plants - 1948; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G33220-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IGVAEMBL:AF378892EMBL:AK222013EMBL:AL035525
EMBL:AL161583EMBL:BT029770EMBL:CP002687EnsemblPlants:AT4G33220EnsemblPlants:AT4G33220.1entrez:829458Gene3D:1.20.140.40
Gene3D:2.160.20.10GeneID:829458Genevisible:Q9SMY7GO:GO:0005576GO:GO:0005618GO:GO:0030599GO:GO:0042545
GO:GO:0043086GO:GO:0045330GO:GO:0045490GO:GO:0046910GO:GO:0050829GO:GO:0071944Gramene:AT4G33220.1
gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31707hmmpanther:PTHR31707:SF10HOGENOM:HOG000217409InParanoid:Q9SMY7InterPro:IPR000070
InterPro:IPR006501InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT4G33220
KO:K01051OMA:WLEWNADPaxDb:Q9SMY7Pfam:PF01095Pfam:PF04043Pfam:Q9SMY7PhylomeDB:Q9SMY7
PIR:T05202PRIDE:Q9SMY7PRO:PR:Q9SMY7PROSITE:PS00503ProteinModelPortal:Q9SMY7Proteomes:UP000006548RefSeq:NP_567917.4
scanprosite:PS00503SMART:SM00856SMR:Q9SMY7STRING:3702.AT4G33220.1SUPFAM:SSF101148SUPFAM:SSF51126TAIR:AT4G33220
tair10-symbols:ATPME44tair10-symbols:PME44UniGene:At.2679UniGene:At.74199UniPathway:UPA00545UniProt:Q9SMY7
Coordinates (TAIR10) chr4:+:16022506..16026130
Molecular Weight (calculated) 58502.30 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.26
Length 525 amino acids
Sequence (TAIR10)
(BLAST)
001: MSCLKYFLIL LMLGLCVSSE ENFQYDYLKV PASEFVSSIN TIVVVIRQVS SILSQFADFS GDRRLQNAVS DCLDLLDFSS EELTWSASAS ENPKGKGNGT
101: GDVGSDTRTW LSAALSNQAT CMEGFDGTSG LVKSLVAGSL DQLYSMLREL LPLVQPEQKP KAVSKPGPIA KGPKAPPGRK LRDTDEDESL QFPDWVRPDD
201: RKLLESNGRT YDVSVALDGT GNFTKIMDAI KKAPDYSSTR FVIYIKKGLY LENVEIKKKK WNIVMLGDGI DVTVISGNRS FIDGWTTFRS ATFAVSGRGF
301: LARDITFQNT AGPEKHQAVA LRSDSDLSVF FRCAMRGYQD TLYTHTMRQF YRECTITGTV DFIFGDGTVV FQNCQILAKR GLPNQKNTIT AQGRKDVNQP
401: SGFSIQFSNI SADADLVPYL NTTRTYLGRP WKLYSRTVFI RNNMSDVVRP EGWLEWNADF ALDTLFYGEF MNYGPGSGLS SRVKWPGYHV FNNSDQANNF
501: TVSQFIKGNL WLPSTGVTFS DGLYI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)