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AT4G33130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G16750.1); Has 192 Blast hits to 192 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT8CeggNOG:ENOG411083BEMBL:CP002687EnsemblPlants:AT4G33130
EnsemblPlants:AT4G33130.1entrez:829450ExpressionAtlas:F4JVY3GeneID:829450
Gramene:AT4G33130.1hmmpanther:PTHR23054hmmpanther:PTHR23054:SF10InParanoid:F4JVY3
InterPro:IPR025757ncoils:CoilOMA:CELEQDIPaxDb:F4JVY3
Pfam:PF14389PRIDE:F4JVY3Proteomes:UP000006548RefSeq:NP_195039.6
TAIR:AT4G33130UniGene:At.2672UniProt:F4JVY3
Coordinates (TAIR10) chr4:-:15979437..15980655
Molecular Weight (calculated) 25349.80 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.73
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MLCIKAEALH EDQNLASSSS SPSTDRTFGN ATFRLPINWG SSIRRYLKKT GTFSRRSYSS GDGSLFFPDL DESKMIDQTS GRFDGKTKLW YKCELEQDIK
101: RLQQQLQEEI NLRLALTSAV EHSSSPFMDS PCELPDKAQE LLDSLAILEI TVSKLEQESV SLRYLLRQEK NERRLSEILQ KKSHYSAPSK FTNAQNFPNK
201: SVTRKRESKQ VDSLDSEALQ VE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)