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AT4G33090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : aminopeptidase M1
Curator
Summary (TAIR10)
encodes an aminopeptidase, a ortholog of mouse microsomal AP (EC 3.4.11.2).
Computational
Description (TAIR10)
aminopeptidase M1 (APM1); FUNCTIONS IN: aminopeptidase activity; INVOLVED IN: auxin polar transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, puromycin-sensitive aminopeptidase (InterPro:IPR015568), Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782); BEST Arabidopsis thaliana protein match is: Peptidase M1 family protein (TAIR:AT1G63770.3); Has 9205 Blast hits to 9101 proteins in 1870 species: Archae - 122; Bacteria - 4443; Metazoa - 2260; Fungi - 495; Plants - 237; Viruses - 0; Other Eukaryotes - 1648 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G33090-MONOMERBioGrid:14731EC:3.4.11.2eggNOG:COG0308eggNOG:KOG1046EMBL:AK222071EMBL:AK227105
EMBL:AL035525EMBL:AL161582EMBL:AY064961EMBL:AY143574EMBL:BT005811EMBL:CP002687EnsemblPlants:AT4G33090
EnsemblPlants:AT4G33090.1entrez:829446GeneID:829446Genevisible:Q8VZH2GO:GO:0004177GO:GO:0005783GO:GO:0005829
GO:GO:0005886GO:GO:0008270GO:GO:0009926GO:GO:0010013GO:GO:0031090GO:GO:0042277GO:GO:0043171
GO:GO:0070006Gramene:AT4G33090.1hmmpanther:PTHR11533hmmpanther:PTHR11533:SF189HOGENOM:HOG000106482InParanoid:Q8VZH2IntAct:Q8VZH2
InterPro:IPR001930InterPro:IPR014782InterPro:IPR024571KEGG:ath:AT4G33090KO:K08776MEROPS:M01.A25OMA:XETALLI
PANTHER:PTHR11533PaxDb:Q8VZH2Pfam:PF01433Pfam:PF11838Pfam:Q8VZH2PhylomeDB:Q8VZH2PIR:T05189
PRIDE:Q8VZH2PRINTS:PR00756PRO:PR:Q8VZH2ProMEX:Q8VZH2PROSITE:PS00142ProteinModelPortal:Q8VZH2Proteomes:UP000006548
Reactome:R-ATH-983168RefSeq:NP_195035.2SMR:Q8VZH2STRING:3702.AT4G33090.1SUPFAM:0038696SUPFAM:SSF55486TAIR:AT4G33090
tair10-symbols:APM1tair10-symbols:ATAPM1UniGene:At.23906UniProt:Q8VZH2
Coordinates (TAIR10) chr4:-:15965915..15970418
Molecular Weight (calculated) 98184.00 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.16
Length 879 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQFKGEPRL PKFAVPKRYD LRLNPDLIAC TFTGTVAIDL DIVADTRFIV LNAADLSVND ASVSFTPPSS SKALAAPKVV LFEEDEILVL EFGEILPHGV
101: GVLKLGFNGV LNDKMKGFYR STYEHNGEKK NMAVTQFEPA DARRCFPCWD EPACKATFKI TLEVPTDLVA LSNMPIMEEK VNGNLKIVSY QESPIMSTYL
201: VAIVVGLFDY VEDHTSDGIK VRVYCQVGKA DQGKFALHVG AKTLDLFKEY FAVPYPLPKM DMIAIPDFAA GAMENYGLVT YRETALLYDE QHSAASNKQR
301: VATVVAHELA HQWFGNLVTM EWWTHLWLNE GFATWVSYLA TDSLFPEWKI WTQFLDESTE GLRLDGLEES HPIEVEVNHA AEIDEIFDAI SYRKGASVIR
401: MLQSYLGAEV FQKSLAAYIK NHAYSNAKTE DLWAALEAGS GEPVNKLMSS WTKQKGYPVV SAKIKDGKLE LEQSRFLSSG SPGEGQWIVP VTLCCGSYEK
501: RKNFLLESKS GAYDLKELLG CSIADGSDKI NGTCSWIKIN VDQAGFYRVK YDDSLAAGLR NATESQSLTS IDRYGILDDS FALTMARQQS LASLLTLCSA
601: YKKELDYTVL SNLIAISYKV VKIGADANQE LMSGIKHFFI GVFQFAAGKL GWDPKQGESH LDAMLRGEVL TALAVFGHDE TLKEAVRRFD AFLADRNTPL
701: LPPDIRRAAY VAVMQRANKS DKSGYESLLR VYRETDLSQE KTRILGSLAS CPDPTIVQDV LNFVLSDEVR NQDALYGLSG VSWEGREVAW KWLQEKWEYI
801: GNTWGSGFLI TRFISAVVSP FASFEKAKEV EEFFATRSKP SMARTLKQSI ERVHINANWV ESIKKEDNLT QLVAQLSSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)