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AT4G33050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.477
cytosol 0.421
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calmodulin-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo sac development arrest 39 (EDA39); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT2G26190.1); Has 290 Blast hits to 243 proteins in 49 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 98; Plants - 184; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQ1QeggNOG:ENOG4111I0KEMBL:AL031804EMBL:AL161582EMBL:AY062551EMBL:BT008453EMBL:CP002687
EnsemblPlants:AT4G33050EnsemblPlants:AT4G33050.1EnsemblPlants:AT4G33050.3entrez:829442ExpressionAtlas:O82645GeneID:829442Genevisible:O82645
GO:GO:0005634GO:GO:0005737hmmpanther:PTHR31250hmmpanther:PTHR31250:SF13HOGENOM:HOG000237977PhylomeDB:O82645PIR:T05313
PRIDE:O82645ProteinModelPortal:O82645Proteomes:UP000006548RefSeq:NP_195031.2RefSeq:NP_974673.2TAIR:AT4G33050tair10-symbols:EDA39
UniGene:At.22198UniGene:At.27460UniProt:Q8W4H9
Coordinates (TAIR10) chr4:-:15945235..15946736
Molecular Weight (calculated) 42678.10 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.49
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLEVGSLCF KLKDGGLTSR TNSFKRDDTN RHQNSPKSTM ERSLSFNSWE VPKETKTDSD FEVLETKKST PNTLNGRNCE RIQIKKPTVT PPEPFVFFSP
101: RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWRT LEGAALDLSS VSFFGEEKHE TAVSKWARAR KRAAKVGKGL SKDEKAQKLA LQHWLEAVSP
201: HNLNIFVTSY QRQVPYLTSK AIIEYTLMIH LLKLQIDPRH RYGHNLHFYY DVWSASKSTQ PFFYWLDIGD GKDVNLEKHP RSVLQKQCIR YLGPMEREAY
301: EVIVEDGRLM YKQGMTLINS TEEAKSIFVL STTRNLYVGI KKKGLFQHSS FLSGGATTAA GRLVARDGIL EVLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)