suba logo
AT4G33040.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT5G11930.1); Has 1149 Blast hits to 1147 proteins in 175 species: Archae - 0; Bacteria - 20; Metazoa - 257; Fungi - 124; Plants - 712; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
BioGrid:14726eggNOG:COG0695eggNOG:KOG1752EMBL:AL031804EMBL:AL161582EMBL:AY074290EMBL:AY088260
EMBL:AY091245EMBL:CP002687EMBL:FJ611920EnsemblPlants:AT4G33040EnsemblPlants:AT4G33040.1entrez:829441Gene3D:3.40.30.10
GeneID:829441Genevisible:Q8L9S3GO:GO:0005737GO:GO:0009055GO:GO:0015035GO:GO:0045454Gramene:AT4G33040.1
hmmpanther:PTHR10168hmmpanther:PTHR10168:SF56HOGENOM:HOG000095204InParanoid:Q8L9S3IntAct:Q8L9S3InterPro:IPR002109InterPro:IPR011905
InterPro:IPR012336KEGG:ath:AT4G33040OMA:RECVGGLPaxDb:Q8L9S3Pfam:PF00462Pfam:Q8L9S3Pfscan:PS51354
PhylomeDB:Q8L9S3PIR:T05312PRIDE:Q8L9S3PRO:PR:Q8L9S3PROSITE:PS51354ProteinModelPortal:Q8L9S3Proteomes:UP000006548
RefSeq:NP_195030.1SMR:Q8L9S3STRING:3702.AT4G33040.1SUPFAM:SSF52833TAIR:AT4G33040TIGRfam:TIGR02189TIGRFAMs:TIGR02189
UniGene:At.31615UniProt:Q8L9S3
Coordinates (TAIR10) chr4:-:15940779..15941213
Molecular Weight (calculated) 15567.00 Da
IEP (calculated) 4.71
GRAVY (calculated) 0.26
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MMQELGLQRF SNDVVRLDLT PPSQTSSTSL SIDEEESTEA KIRRLISEHP VIIFSRSSCC MCHVMKRLLA TIGVIPTVIE LDDHEVSSLP TALQDEYSGG
101: VSVVGPPPAV FIGRECVGGL ESLVALHLSG QLVPKLVQVG ALWV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)