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AT4G32980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox gene 1
Curator
Summary (TAIR10)
Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.
Computational
Description (TAIR10)
homeobox gene 1 (ATH1); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 7 (TAIR:AT2G16400.1); Has 5042 Blast hits to 5042 proteins in 335 species: Archae - 0; Bacteria - 0; Metazoa - 2114; Fungi - 285; Plants - 2468; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).
Protein Annotations
BioGrid:14720eggNOG:ENOG410XPMQeggNOG:KOG0773EMBL:AL031804EMBL:AL161582EMBL:AY072174EMBL:AY096513
EMBL:CP002687EMBL:X80126EMBL:X80127EMBL:Z83320EnsemblPlants:AT4G32980EnsemblPlants:AT4G32980.1entrez:829435
Gene3D:1.10.10.60GeneID:829435Genevisible:P48731GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0008285GO:GO:0009640GO:GO:0010227GO:GO:0010228GO:GO:0010371GO:GO:0043565GO:GO:0090470
Gramene:AT4G32980.1hmmpanther:PTHR11850hmmpanther:PTHR11850:SF92HOGENOM:HOG000034160InParanoid:P48731IntAct:P48731InterPro:IPR001356
InterPro:IPR006563InterPro:IPR008422InterPro:IPR009057iPTMnet:P48731KEGG:ath:AT4G32980OMA:DDRYSHCPaxDb:P48731
Pfam:P48731Pfam:PF05920Pfam:PF07526Pfscan:PS50071PhylomeDB:P48731PIR:T05306PRIDE:P48731
PRO:PR:P48731PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:P48731Proteomes:UP000006548RefSeq:NP_195024.1SMART:SM00389
SMART:SM00574SMR:P48731STRING:3702.AT4G32980.1SUPFAM:SSF46689TAIR:AT4G32980tair10-symbols:ATH1UniGene:At.76
UniProt:P48731
Coordinates (TAIR10) chr4:-:15914865..15916873
Molecular Weight (calculated) 53902.70 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.53
Length 473 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)